Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008815

Physical Location & Seq

Genomic Coordinates Reverse (-)

11231806 .. 11236463

Gene Structure 4658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGCTACTACCATAGCTCATTCGGCGCTGGCGTTTACTGCAGCGGCTTCCGGTTCGGCTTCGGACGGGTTCAGGAGCTCGAGTAATGGAGTTAATGGAGTTCCTCTCAGGGCCCTTGGGAAGGCCAGGTTCGGCATGAAGAGGAACCTTGCGGTCTCGGCCAAGCTCAGGAAGGTGAAGAAGCACGACTATCCATGGCCGGCCGATCCGGATCCGAATGTCAAAGGAGGAGTGCTTACTCATCTCTCTCACTTCAAGCCGCTCAAAGAGAAGCCCAAGCCGGTTACTCTGCCTTTCGAGAAGCCTCTCGTTGAAATCGAAAAGAAGATCATTGATGTGCGGAAGATGGCTAACGAAACTGGACTGGACTTCAGTGATCAAATTATTTCATTGGAGAATAAACACCAACAGGCTTTAAAGGATTTATATTTGAATCTCACTCCTATACAACGCGTAAATATTGCACGACATCCTAACAGGCCAACTTTCCTTGATCATGTGTTTAACATTACTGATACGTTTGTAGAGCTTCATGGAGACCGAGCAGGGTATGATGATCCTGCTATTGTCACTGGTATTGGAACTATAGATGGTAATAGGTATATGTTTATGGGTCACCAGAAAGGTAGAAATACGAAGGAAAACATTCAGCGTAACTTTGGGATGCCTACTCCTCATGGTTACCGGAAGGCTCTGCGCATGATGTACTACGCAGATCACCATGGGTTCCCCATTGTTACTTTCATTGATACTCCTGGTGCATATGCAGACCTTAAATCTGAGGAGTTGGGCCAAGGTGAAGCCATAGCTCACAACTTGCGGACTATGTTCGGTCTGAAGGTACCAATTGTTTCTATCGTCATTGGGGAAGGTGGATCTGGTGGTGCCCTTGCCATTGGCTGTGCTAATAAACTATTAATGCTTGAAAATGCAGTTTTTTATGTTGCCAGTCCTGAAGCATGTGCAGCAATCTTGTGGAAGAGTGCCAAAGCATCTCCAAAGGCAGCTGAGAAGCTGAAAATTACTGCAGCTGAGTTGTGCAAGCTGCAAATTGCAGACGGCATCATCCCTGAGCCGCTCGGTGGTGCACATGCAGATTCCTCGTGGACCTCTCAACAGATCAAAAATGCAATTAACAAAGAAATGGATGAGCTTAAGAAGATGGACACTGAAGCACTATTAAAGCATCGCATGATGAAGTTCCGCAAAATTGGTGGGTTCCAAGAAGGAATCCCGATAGATCCAACGAAGAAAAGGAACATGAAACTGAAAGAGGAACCCAAGGTTTCAGTTGTGGATTTAGAGGGTGAAGTTGAAAAGGTCAAACTGCAAATTGAGGAGGCAAAGAAATCCTCTGATAAGCCGGCATTGTTGCCTCTGACTGAGGCAATAGAAAAACTGAAAAGGGAGGTTGATAATGAATTTTCTGAGGCAGTTAAAGCCCTAGGCTTGAAAGACAGGTTTGAGTCATTGCAGGAAGAATTTTTGAAAATAAGTTCACAGGACCAACTCATGCATCCAGCTCTGAAAGAAAAGATTCAAAAGCTTAGGCATGAATTTACCCAGAGCCTGTCATCTGCTCCTAATTATGAAGACCTAAAGTATAAACTTGACATGCTGAAGGAATTATCAAAAGCATATAAATACGAGGAGAAGAACAACAAAGCTGCAACATTGAAGCAGGAAGTTAACAATAAATTTCACGAAATCATGGAACGGCCAGATGTTAAGGAGAAGACTGCGGCACTTAGGGCTGAGATTGAAAATGCCGGGGTGTCTAACCTTGATGATTTGGATGACAGCCTGAAGGGGAAGATTTTGGAATTGAAGAAAGAGTTGGACTCTGAATTTGTTGGTGTCCTCAAGTCCTTGGGGTTGGATGTTGAGATTAGATCAAAAGAACCAATTGAGAAAATTTTGCCCTCAGAAGTCAAGACCAAGATTGAAGAATTGAATGAAGAAATTAATCACAAGATTGAAAATGTTATCAATTCATCAGACTTGAAAGACAAGATTGAGTTGCTAAAGTTGGAAGTAGCGAAGGCAGGTAAGACCCCTGATTCAGCAACAAAAAACAGAATTGTGGCTTTGGAGGAACAAATCAAACAAAGCTTGGCAGCAGCTGTTGAGTCATCAAACCTAAAAGAGAAGCATGAGAAGCTTAAAGCTGAGGTTTCCAAAACCATTGAATCTTCTGGAGAATCAGATGGAAGTTTGAAAAAGAAAAATCCAAATGAAGTCTATGTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

750

Amino Acids

83.48

Weight (kDa)

8.52

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACCA	PF03255	97 - 405	5.1e-132	Acetyl co-enzyme A carboxylase carboxyltransferase-like
Carboxyl_trans	PF01039	175 - 337	1.3e-07	Carboxyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38040 AT2G38040
fragaria_vesca	FvH4_6g12150 FvH4_6g12150 FvH4_6g12150 FvH4_6g12150
malus_domestica	MD04G1146400.v1.1 MD12G1159600.v1.1
prunus_persica	Prupe.6G270200_v2.0.a1
pyrus_communis	pycom04g13200 pycom12g15130
rosa_chinensis	RchiOBHm_Chr3g0463941
rosa_laevigata	RLG00000024733
rosa_multiflora	Rmu_co8513843.1_g000002 Rmu_sc0006492.1_g000005
rosa_roxburghii	Rroxscaffold_6G00416120
rosa_rugosa	Rorug03G0069500 Rorug03G0069600
rosa_samantha	Rh3AG126300 Rh3BG130300 Rh3CG132900 Rh3DG131700
rosa_wichuraiana	Rw3G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	2036
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	2 cut(s)	841, 884
AccBSI	CCGCTC	2 cut(s)	262, 1078
AccII	CGCG	1 cut(s)	453
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	8 cut(s)	44, 152, 260, 340, 820, 1076, 1204, 1742
AclWI	GGATC	6 cut(s)	200, 206, 219, 551, 883, 1235
AcoI	YGGCCR	4 cut(s)	159, 197, 201, 1718
AcsI	RAATTY	6 cut(s)	1421, 1481, 1556, 1697, 1847, 1914
AcuI	CTGAAG	6 cut(s)	355, 857, 975, 1191, 1640, 1826
AfaI	GTAC	2 cut(s)	707, 843
AfiI	CCNNNNNNNGG	3 cut(s)	121, 168, 1082
AflII	CTTAAG	1 cut(s)	1154
AflIII	ACRYGT	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	125, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	1820, 1852
Alw21I	GWGCWC	2 cut(s)	80, 1090
Alw26I	GTCTC	2 cut(s)	160, 531
Alw44I	GTGCAC	1 cut(s)	1086
AlwI	GGATC	6 cut(s)	200, 206, 219, 551, 883, 1235
AlwNI	CAGNNNCTG	2 cut(s)	1570, 2123
Ama87I	CYCGRG	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	8 cut(s)	111, 123, 159, 197, 201, 479, 790, 1718
ApaI	GGGCCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	1086
ApeKI	GCWGC	8 cut(s)	41, 965, 1004, 1028, 1045, 1667, 2117, 2120
ApoI	RAATTY	6 cut(s)	1421, 1481, 1556, 1697, 1847, 1914
ArsI	GACNNNNNNTTYG	2 cut(s)	1832, 1864
AseI	ATTAAT	2 cut(s)	917, 1965
Asp700I	GAANNNNTTC	2 cut(s)	645, 1536
Asp718I	GGTACC	1 cut(s)	841
AspA2I	CCTAGG	1 cut(s)	1444
AspLEI	GCGC	2 cut(s)	28, 699
AspS9I	GGNCC	5 cut(s)	111, 112, 790, 1107, 1504
AsuC2I	CCSGG	1 cut(s)	1771
AsuHPI	GGTGA	5 cut(s)	187, 608, 710, 809, 1319
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	1107, 1504
AvrII	CCTAGG	1 cut(s)	1444
BaeGI	GKGCMC	3 cut(s)	115, 889, 1090
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	841, 884
BanII	GRGCYC	2 cut(s)	80, 115
BauI	CACGAG	1 cut(s)	1102
BbsI	GAAGAC	2 cut(s)	1599, 1742
Bbv12I	GWGCWC	2 cut(s)	80, 1090
BbvCI	CCTCAGC	1 cut(s)	2169
BbvI	GCAGC	8 cut(s)	53, 977, 1016, 1032, 1040, 1654, 2129, 2132
BccI	CCATC	4 cut(s)	340, 584, 1156, 2201
BceAI	ACGGC	2 cut(s)	1075, 1733
BcgI	CGANNNNNNTGC	2 cut(s)	1083, 1117
BciT130I	CCWGG	2 cut(s)	127, 756
BclI	TGATCA	2 cut(s)	376, 493
BcnI	CCSGG	1 cut(s)	1771
BcoDI	GTCTC	2 cut(s)	160, 531
BfaI	CTAG	1 cut(s)	1445
BfmI	CTRYAG	3 cut(s)	39, 585, 1026
BfoI	RGCGCY	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	1154
BfuAI	ACCTGC	1 cut(s)	2036
BlnI	CCTAGG	1 cut(s)	1444
Bme1390I	CCNGG	3 cut(s)	127, 756, 1771
Bme18I	GGWCC	2 cut(s)	1107, 1504
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	5 cut(s)	111, 112, 790, 1107, 1504
BmiI	GGNNCC	8 cut(s)	113, 146, 213, 728, 843, 886, 1220, 1278
BmrFI	CCNGG	3 cut(s)	127, 756, 1771
BmsI	GCATC	5 cut(s)	654, 1001, 1071, 1195, 1525
BpiI	GAAGAC	2 cut(s)	1599, 1742
BplI	GAGNNNNNCTC	4 cut(s)	90, 122, 1826, 1858
BpmI	CTGGAG	1 cut(s)	2217
Bpu10I	CCTNAGC	4 cut(s)	167, 1071, 1547, 2169
BpuEI	CTTGAG	1 cut(s)	1847
BpuMI	CCSGG	1 cut(s)	1771
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	160, 531
BsaJI	CCNNGG	8 cut(s)	115, 194, 721, 793, 1281, 1444, 1770, 1869
BsaWI	WCCGGW	3 cut(s)	50, 208, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 168, 1082
Bse118I	RCCGGY	3 cut(s)	199, 280, 1363
Bse1I	ACTGG	4 cut(s)	364, 369, 577, 948
Bse3DI	GCAATG	1 cut(s)	1469
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	127, 756
BseDI	CCNNGG	8 cut(s)	115, 194, 721, 793, 1281, 1444, 1770, 1869
BseGI	GGATG	7 cut(s)	469, 669, 1065, 1153, 1516, 1801, 1885
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	121, 168, 1082
BseMI	GCAATG	1 cut(s)	1469
BseNI	ACTGG	4 cut(s)	364, 369, 577, 948
BseRI	GAGGAG	5 cut(s)	243, 663, 797, 1352, 1664
BseSI	GKGCMC	3 cut(s)	115, 889, 1090
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	8 cut(s)	53, 977, 1016, 1032, 1040, 1654, 2129, 2132
BsgI	GTGCAG	1 cut(s)	984
Bsh1236I	CGCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	8 cut(s)	113, 125, 161, 199, 203, 481, 792, 1720
BshNI	GGYRCC	2 cut(s)	841, 884
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	80, 1090
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	7 cut(s)	51, 200, 209, 281, 685, 1364, 1770
BslI	CCNNNNNNNGG	3 cut(s)	121, 168, 1082
BsmAI	GTCTC	2 cut(s)	160, 531
BsnI	GGCC	8 cut(s)	113, 125, 161, 199, 203, 481, 792, 1720
Bso31I	GGTCTC	2 cut(s)	160, 531
BsoBI	CYCGRG	1 cut(s)	79
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	4 cut(s)	80, 115, 889, 1090
Bsp13I	TCCGGA	1 cut(s)	208
Bsp19I	CCATGG	2 cut(s)	194, 721
BspACI	CCGC	8 cut(s)	44, 152, 260, 340, 820, 1076, 1204, 1742
BspANI	GGCC	8 cut(s)	113, 125, 161, 199, 203, 481, 792, 1720
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	8 cut(s)	113, 146, 213, 728, 843, 886, 1220, 1278
BspMAI	CTGCAG	2 cut(s)	43, 1030
BspMI	ACCTGC	1 cut(s)	2036
BspPI	GGATC	6 cut(s)	200, 206, 219, 551, 883, 1235
BspT107I	GGYRCC	2 cut(s)	841, 884
BspTI	CTTAAG	1 cut(s)	1154
BspTNI	GGTCTC	2 cut(s)	160, 531
BsrBI	CCGCTC	2 cut(s)	262, 1078
BsrDI	GCAATG	1 cut(s)	1469
BsrFI	RCCGGY	3 cut(s)	199, 280, 1363
BsrI	ACTGG	4 cut(s)	364, 369, 577, 948
BssAI	RCCGGY	3 cut(s)	199, 280, 1363
BssECI	CCNNGG	8 cut(s)	115, 194, 721, 793, 1281, 1444, 1770, 1869
BssSI	CACGAG	1 cut(s)	1102
BssT1I	CCWWGG	7 cut(s)	115, 194, 721, 793, 1281, 1444, 1869
Bst2BI	CACGAG	1 cut(s)	1102
Bst2UI	CCWGG	2 cut(s)	127, 756
Bst6I	CTCTTC	2 cut(s)	134, 974
BstAFI	CTTAAG	1 cut(s)	1154
BstC8I	GCNNGC	4 cut(s)	30, 201, 1043, 1365
BstDSI	CCRYGG	2 cut(s)	194, 721
BstEII	GGTNACC	2 cut(s)	614, 680
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	7 cut(s)	469, 669, 1065, 1153, 1516, 1801, 1885
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 699
BstMAI	GTCTC	2 cut(s)	160, 531
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 38, 158, 965, 1439, 1751, 2158
BstNI	CCWGG	2 cut(s)	127, 756
BstNSI	RCATGY	3 cut(s)	963, 1094, 1618
BstPI	GGTNACC	2 cut(s)	614, 680
BstSCI	CCNGG	3 cut(s)	125, 754, 1769
BstSFI	CTRYAG	3 cut(s)	39, 585, 1026
BstSLI	GKGCMC	3 cut(s)	115, 889, 1090
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	8 cut(s)	53, 977, 1016, 1032, 1040, 1654, 2129, 2132
BstV2I	GAAGAC	2 cut(s)	1599, 1742
BstX2I	RGATCY	3 cut(s)	211, 875, 1240
BstYI	RGATCY	3 cut(s)	211, 875, 1240
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	8 cut(s)	113, 125, 161, 199, 203, 481, 792, 1720
BtgI	CCRYGG	2 cut(s)	194, 721
BtgZI	GCGATG	1 cut(s)	1172
BtsCI	GGATG	7 cut(s)	469, 669, 1065, 1153, 1516, 1801, 1885
BtsIMutI	CAGTG	3 cut(s)	379, 570, 1167
BveI	ACCTGC	1 cut(s)	2036
Cac8I	GCNNGC	4 cut(s)	30, 201, 1043, 1365
CaiI	CAGNNNCTG	2 cut(s)	1570, 2123
CfoI	GCGC	2 cut(s)	28, 699
Cfr10I	RCCGGY	3 cut(s)	199, 280, 1363
Cfr13I	GGNCC	5 cut(s)	111, 112, 790, 1107, 1504
Csp6I	GTAC	2 cut(s)	706, 842
CspCI	CAANNNNNGTGG	2 cut(s)	1195, 1230
CviQI	GTAC	2 cut(s)	706, 842
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	4 cut(s)	159, 197, 201, 1718
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	134, 974
EarI	CTCTTC	2 cut(s)	134, 974
Ecl136II	GAGCTC	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	7 cut(s)	115, 194, 721, 793, 1281, 1444, 1869
Eco24I	GRGCYC	2 cut(s)	80, 115
Eco31I	GGTCTC	2 cut(s)	160, 531
Eco47I	GGWCC	2 cut(s)	1107, 1504
Eco52I	CGGCCG	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	6 cut(s)	355, 857, 975, 1191, 1640, 1826
Eco88I	CYCGRG	1 cut(s)	79
Eco91I	GGTNACC	2 cut(s)	614, 680
EcoICRI	GAGCTC	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	111, 112
EcoO65I	GGTNACC	2 cut(s)	614, 680
EcoRII	CCWGG	2 cut(s)	125, 754
EcoT14I	CCWWGG	7 cut(s)	115, 194, 721, 793, 1281, 1444, 1869
EcoT22I	ATGCAT	1 cut(s)	1518
EcoT38I	GRGCYC	2 cut(s)	80, 115
ErhI	CCWWGG	7 cut(s)	115, 194, 721, 793, 1281, 1444, 1869
FauNDI	CATATG	1 cut(s)	763
FbaI	TGATCA	2 cut(s)	376, 493
FokI	GGATG	7 cut(s)	456, 676, 1052, 1160, 1503, 1808, 1892
FriOI	GRGCYC	2 cut(s)	80, 115
FseI	GGCCGGCC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	1445
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	2 cut(s)	27, 698
GsuI	CTGGAG	1 cut(s)	2217
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	8 cut(s)	113, 125, 161, 199, 203, 481, 792, 1720
HapII	CCGG	7 cut(s)	51, 200, 209, 281, 685, 1364, 1770
HhaI	GCGC	2 cut(s)	28, 699
Hin6I	GCGC	2 cut(s)	26, 697
HinP1I	GCGC	2 cut(s)	26, 697
HincII	GTYRAC	1 cut(s)	1690
HindII	GTYRAC	1 cut(s)	1690
HindIII	AAGCTT	3 cut(s)	1544, 2110, 2159
HpaI	GTTAAC	1 cut(s)	1690
HpaII	CCGG	7 cut(s)	51, 200, 209, 281, 685, 1364, 1770
HphI	GGTGA	5 cut(s)	187, 608, 710, 809, 1319
Hpy166II	GTNNAC	5 cut(s)	36, 1088, 1107, 1499, 1690
Hpy188III	TCNNGA	9 cut(s)	73, 169, 209, 298, 953, 1234, 1703, 1933, 2196
Hpy8I	GTNNAC	5 cut(s)	36, 1088, 1107, 1499, 1690
HpyCH4IV	ACGT	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 38, 158, 965, 1439, 1751, 2158
HpySE526I	ACGT	1 cut(s)	518
HspAI	GCGC	2 cut(s)	26, 697
Kpn2I	TCCGGA	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	845
KroI	GCCGGC	2 cut(s)	199, 1363
KroNI	GCCGGC	2 cut(s)	201, 1365
Ksp22I	TGATCA	2 cut(s)	376, 493
KspAI	GTTAAC	1 cut(s)	1690
LmnI	GCTCC	2 cut(s)	75, 1585
Lsp1109I	GCAGC	8 cut(s)	53, 977, 1016, 1032, 1040, 1654, 2129, 2132
LweI	GCATC	5 cut(s)	654, 1001, 1071, 1195, 1525
MaeI	CTAG	1 cut(s)	1445
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	6 cut(s)	283, 568, 614, 653, 680, 736
MbiI	CCGCTC	2 cut(s)	262, 1078
MfeI	CAATTG	2 cut(s)	846, 1905
MflI	RGATCY	3 cut(s)	211, 875, 1240
MhlI	GDGCHC	4 cut(s)	80, 115, 889, 1090
MluI	ACGCGT	1 cut(s)	451
MlyI	GAGTC	3 cut(s)	1475, 1835, 2138
MmeI	TCCRAC	4 cut(s)	1268, 1818, 1857, 2010
Mph1103I	ATGCAT	1 cut(s)	1518
MroI	TCCGGA	1 cut(s)	208
MroNI	GCCGGC	2 cut(s)	199, 1363
MroXI	GAANNNNTTC	2 cut(s)	645, 1536
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	4 cut(s)	44, 1007, 1031, 2123
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	7 cut(s)	51, 200, 209, 281, 685, 1364, 1770
MspR9I	CCNGG	3 cut(s)	127, 756, 1771
MunI	CAATTG	2 cut(s)	846, 1905
MvaI	CCWGG	2 cut(s)	127, 756
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	7 cut(s)	23, 38, 158, 965, 1439, 1751, 2158
NaeI	GCCGGC	2 cut(s)	201, 1365
NciI	CCSGG	1 cut(s)	1771
NcoI	CCATGG	2 cut(s)	194, 721
NdeI	CATATG	1 cut(s)	763
NgoMIV	GCCGGC	2 cut(s)	199, 1363
NlaIV	GGNNCC	8 cut(s)	113, 146, 213, 728, 843, 886, 1220, 1278
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	568, 614
NsbI	TGCGCA	1 cut(s)	698
NsiI	ATGCAT	1 cut(s)	1518
NspI	RCATGY	3 cut(s)	963, 1094, 1618
PaeR7I	CTCGAG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 315
PdiI	GCCGGC	2 cut(s)	201, 1365
PdmI	GAANNNNTTC	2 cut(s)	645, 1536
PfeI	GAWTC	7 cut(s)	433, 1097, 1230, 1537, 2060, 2189, 2201
PleI	GAGTC	3 cut(s)	1474, 1835, 2137
PpsI	GAGTC	3 cut(s)	1474, 1835, 2137
PshBI	ATTAAT	2 cut(s)	917, 1965
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	125, 754
PspEI	GGTNACC	2 cut(s)	614, 680
PspGI	CCWGG	2 cut(s)	125, 754
PspN4I	GGNNCC	8 cut(s)	113, 146, 213, 728, 843, 886, 1220, 1278
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	5 cut(s)	111, 112, 790, 1107, 1504
PspXI	VCTCGAGB	1 cut(s)	79
PstI	CTGCAG	2 cut(s)	43, 1030
PstNI	CAGNNNCTG	2 cut(s)	1570, 2123
PsuI	RGATCY	3 cut(s)	211, 875, 1240
PvuII	CAGCTG	3 cut(s)	1007, 1031, 2123
RigI	GGCCGGCC	1 cut(s)	203
RsaI	GTAC	2 cut(s)	707, 843
RsaNI	GTAC	2 cut(s)	706, 842
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	80
Sau96I	GGNCC	5 cut(s)	111, 112, 790, 1107, 1504
SchI	GAGTC	3 cut(s)	1475, 1835, 2138
ScrFI	CCNGG	3 cut(s)	127, 756, 1771
SduI	GDGCHC	4 cut(s)	80, 115, 889, 1090
SfaNI	GCATC	5 cut(s)	654, 1001, 1071, 1195, 1525
SfcI	CTRYAG	3 cut(s)	39, 585, 1026
Sfr274I	CTCGAG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	1107, 1504
SlaI	CTCGAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	3 cut(s)	79, 1154, 1862
SmoI	CTYRAG	3 cut(s)	79, 1154, 1862
SsiI	CCGC	8 cut(s)	44, 152, 260, 340, 820, 1076, 1204, 1742
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	1445
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	125, 754, 1769
StyI	CCWWGG	7 cut(s)	115, 194, 721, 793, 1281, 1444, 1869
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	3 cut(s)	80, 297, 318
TaqII	GACCGA	2 cut(s)	555, 821
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	4 cut(s)	47, 262, 1078, 1745
TfiI	GAWTC	7 cut(s)	433, 1097, 1230, 1537, 2060, 2189, 2201
TscAI	CASTG	3 cut(s)	379, 577, 1174
TseFI	GTSAC	2 cut(s)	568, 614
TseI	GCWGC	8 cut(s)	41, 965, 1004, 1028, 1045, 1667, 2117, 2120
Tsp45I	GTSAC	2 cut(s)	568, 614
TspRI	CASTG	3 cut(s)	379, 577, 1174
Vha464I	CTTAAG	1 cut(s)	1154
VneI	GTGCAC	1 cut(s)	1086
VpaK11BI	GGWCC	2 cut(s)	1107, 1504
VspI	ATTAAT	2 cut(s)	917, 1965
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	6 cut(s)	1421, 1481, 1556, 1697, 1847, 1914
XceI	RCATGY	3 cut(s)	963, 1094, 1618
XhoI	CTCGAG	1 cut(s)	79
XmaJI	CCTAGG	1 cut(s)	1444
XmnI	GAANNNNTTC	2 cut(s)	645, 1536
XspI	CTAG	1 cut(s)	1445
Zsp2I	ATGCAT	1 cut(s)	1518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.