Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008815

Physical Location & Seq

Genomic Coordinates Reverse (-)

5443846 .. 5445292

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGCCGGAAGAGATGACATTACAATTTCTTTCGAGGCTGCCTCCCAAATCTCTGATGCGATTCAAGTGCATCCGTAAGTCATGGTATGCTTTGATCAATAATCCCAAGTTCATAGACAAGCACCTCCACTTGTACAACAAAGACTCCTACACTTGCTTCCTTCTCAAGCGCTCCGTGGTTGCAAGAACCCAAACTATCAAAGAGGAGATTTTATTTTCATTCCTTTATGTTCCCAATGACAATGATGATGAAGACAGTCATCCACATTGTGTTGTGGAGGACATCTATTTTCCGATTGCTATGGGTCTAAAGACTAAGGGGCACAATATTGAGCTCCCTGGGTCATATGGTGGTGAAACTATATACATTTTAGGTCATTGTGATGGGATCATTTGTCTAGTTTATCATAGCGGAGGCCTTGTGTTCTACAACCCATCGATACGAGAATTCAAGATTATTCCCCCTTCATGTCTTACCGAGTCATTCTCTTGTGTTGGGGGATTTGGATATGATCCAAAATGTAAGGATTACAAGGTGGTTAATATTGCACCATCAGGTGAAGATTCATATGATCATAACCAGCGTCTGGTTATTTATCCTCCAAGGGCAGAAGTATACACTTTGGGTACTGATTCTTGGAGGCAAATCAAGATTGATTATTTAGAAACAGAAACTACTAGCTTTTGGCCTGACATTTATCAGATGTGCTACAAGGGAGTTTTTTATTGGTTGGGTCATGAACAAGATAAGGAATACCTCTGTTATTATGACAGGCTTTCGTCGCCAAGCATTAGGGATGTAATCCTTTTGTATGACACGGGTGAAGAGGTATTTCGTACTAGACTACTTCCGGATAGTTTCAAGGACCTAGGATTGCATGCTCTATCTATGAGTCTAACAGTGTGGAATGGATCCATTGCTCTTTTTGGTTTTTCTTATTGGGGTCCGGATATTGAGTCCTTCAAAATATGGATGATGGATGACTTTGGCAGTTGGACAAAACACTGGACCTATGAGACCATAATGGGAATTTATTTGTCATTGGTGTTATGGAGAAGTGACGACGTTCTTATGGTTGCCAATGACGGACGTATAGTCTCCTATAGTCTAAGTAGAGATAGGGTTAAGTATTTTCCAATTCAAGGTGTTTGGGGAACTTATCAAGCTTTCGTTTGTGTGAATTCGAATAGTATTGTTTCAGTCAAGGGAGGCAACAAGGTTGAGAGCAGAGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

412

Amino Acids

47.72

Weight (kDa)

5.69

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	104 - 336	4.4e-19	F-box associated beta propeller domain
FBA_1	PF07734	113 - 339	1.2e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38040 AT2G38040
fragaria_vesca	FvH4_6g12150 FvH4_6g12150 FvH4_6g12150 FvH4_6g12150
malus_domestica	MD04G1146400.v1.1 MD12G1159600.v1.1
prunus_persica	Prupe.6G270200_v2.0.a1
pyrus_communis	pycom04g13200 pycom12g15130
rosa_chinensis	RchiOBHm_Chr3g0463941
rosa_laevigata	RLG00000024733
rosa_multiflora	Rmu_co8513843.1_g000002 Rmu_sc0006492.1_g000005
rosa_roxburghii	Rroxscaffold_6G00416120
rosa_rugosa	Rorug03G0069500 Rorug03G0069600
rosa_samantha	Rh3AG126300 Rh3BG130300 Rh3CG132900 Rh3DG131700
rosa_wichuraiana	Rw3G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	615
AccIII	TCCGGA	2 cut(s)	850, 946
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	4 cut(s)	395, 506, 906, 919
AcsI	RAATTY	3 cut(s)	446, 1029, 1180
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	134, 628, 838
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	586, 1142
AgsI	TTSAA	5 cut(s)	64, 451, 862, 964, 1142
AhdI	GACNNNNNGTC	1 cut(s)	1094
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	334, 681, 1166
AluI	AGCT	3 cut(s)	334, 681, 1166
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	1010, 1102
AlwI	GGATC	4 cut(s)	395, 506, 906, 919
AlwNI	CAGNNNCTG	1 cut(s)	586
Aor13HI	TCCGGA	2 cut(s)	850, 946
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	2 cut(s)	415, 686
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	3 cut(s)	446, 1029, 1180
AspA2I	CCTAGG	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	865, 944, 1008
AsuHPI	GGTGA	3 cut(s)	365, 569, 833
AsuII	TTCGAA	1 cut(s)	1184
AvaII	GGWCC	3 cut(s)	865, 944, 1008
AvrII	CCTAGG	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	911
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	4 cut(s)	377, 442, 559, 970
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	2 cut(s)	93, 571
BcoDI	GTCTC	2 cut(s)	1010, 1102
BfaI	CTAG	4 cut(s)	398, 678, 840, 869
BfmI	CTRYAG	1 cut(s)	1102
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	1 cut(s)	38
BlnI	CCTAGG	1 cut(s)	868
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	3 cut(s)	865, 944, 1008
BmeRI	GACNNNNNGTC	1 cut(s)	1094
BmgT120I	GGNCC	3 cut(s)	865, 944, 1008
BmiI	GGNNCC	2 cut(s)	913, 945
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	45, 78
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	4 cut(s)	25, 57, 470, 502
Bpu14I	TTCGAA	1 cut(s)	1184
BpuEI	CTTGAG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	5 cut(s)	174, 337, 338, 602, 868
BsaWI	WCCGGW	2 cut(s)	850, 946
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 1142
Bse1I	ACTGG	1 cut(s)	1010
Bse3DI	GCAATG	1 cut(s)	915
BseAI	TCCGGA	2 cut(s)	850, 946
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	437
BseDI	CCNNGG	5 cut(s)	174, 337, 338, 602, 868
BseGI	GGATG	5 cut(s)	69, 259, 802, 978, 985
BseLI	CCNNNNNNNGG	2 cut(s)	586, 1142
BseMI	GCAATG	1 cut(s)	915
BseNI	ACTGG	1 cut(s)	1010
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	2 cut(s)	417, 688
BshVI	ATCGAT	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	5, 851, 947
BslI	CCNNNNNNNGG	2 cut(s)	586, 1142
BsmAI	GTCTC	2 cut(s)	1010, 1102
BsnI	GGCC	2 cut(s)	417, 688
Bso31I	GGTCTC	1 cut(s)	1010
Bsp119I	TTCGAA	1 cut(s)	1184
Bsp1286I	GDGCHC	2 cut(s)	324, 336
Bsp13I	TCCGGA	2 cut(s)	850, 946
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	93, 387, 511, 571, 911
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	417, 688
BspDI	ATCGAT	1 cut(s)	437
BspEI	TCCGGA	2 cut(s)	850, 946
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	913, 945
BspPI	GGATC	4 cut(s)	395, 506, 906, 919
BspT104I	TTCGAA	1 cut(s)	1184
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	915
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	1010
BssECI	CCNNGG	5 cut(s)	174, 337, 338, 602, 868
BssMI	GATC	5 cut(s)	93, 387, 511, 571, 911
BssNAI	GTATAC	1 cut(s)	616
BssT1I	CCWWGG	2 cut(s)	602, 868
Bst1107I	GTATAC	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	257, 901
Bst6I	CTCTTC	2 cut(s)	3, 819
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	1184
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	2 cut(s)	315, 1109
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	5 cut(s)	69, 259, 802, 978, 985
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	5 cut(s)	96, 390, 514, 574, 914
BstMAI	GTCTC	2 cut(s)	1010, 1102
BstMBI	GATC	5 cut(s)	93, 387, 511, 571, 911
BstMWI	GCNNNNNNNGC	1 cut(s)	781
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	1102
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BstZ17I	GTATAC	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	417, 688
BsuTUI	ATCGAT	1 cut(s)	437
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	5 cut(s)	69, 259, 802, 978, 985
BtsIMutI	CAGTG	2 cut(s)	906, 1003
Cac8I	GCNNGC	1 cut(s)	879
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	865, 944, 1008
ClaI	ATCGAT	1 cut(s)	437
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	133, 627, 837
CviAII	CATG	4 cut(s)	81, 468, 737, 878
CviJI	RGCY	7 cut(s)	37, 334, 417, 681, 688, 775, 1166
CviKI_1	RGCY	7 cut(s)	37, 334, 417, 681, 688, 775, 1166
CviQI	GTAC	3 cut(s)	133, 627, 837
DdeI	CTNAG	2 cut(s)	315, 1109
DpnI	GATC	5 cut(s)	95, 389, 513, 573, 913
DpnII	GATC	5 cut(s)	93, 387, 511, 571, 911
DraIII	CACNNNGTG	1 cut(s)	269
DriI	GACNNNNNGTC	1 cut(s)	1094
Eam1104I	CTCTTC	2 cut(s)	3, 819
Eam1105I	GACNNNNNGTC	1 cut(s)	1094
EarI	CTCTTC	2 cut(s)	3, 819
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	602, 868
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	3 cut(s)	865, 944, 1008
Eco47III	AGCGCT	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRI	GAATTC	2 cut(s)	446, 1180
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	602, 868
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	602, 868
FaeI	CATG	4 cut(s)	84, 471, 740, 881
FatI	CATG	4 cut(s)	80, 467, 736, 877
FauNDI	CATATG	2 cut(s)	346, 568
FbaI	TGATCA	2 cut(s)	93, 571
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	5 cut(s)	56, 246, 809, 985, 992
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	4 cut(s)	398, 678, 840, 869
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	417, 688
HapII	CCGG	3 cut(s)	5, 851, 947
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	84, 471, 740, 881
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	1164
HinfI	GANTC	7 cut(s)	60, 143, 479, 563, 632, 892, 956
HpaII	CCGG	3 cut(s)	5, 851, 947
HphI	GGTGA	3 cut(s)	365, 569, 833
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	54, 294, 702
Hpy188III	TCNNGA	5 cut(s)	451, 649, 737, 851, 947
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	2 cut(s)	784, 1067
HpyAV	CCTTC	3 cut(s)	170, 474, 970
HpyCH4III	ACNGT	2 cut(s)	257, 901
HpyCH4IV	ACGT	2 cut(s)	1065, 1090
HpyCH4V	TGCA	4 cut(s)	69, 182, 548, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	781
HpyF3I	CTNAG	2 cut(s)	315, 1109
HpySE526I	ACGT	2 cut(s)	1065, 1090
Hsp92II	CATG	4 cut(s)	84, 471, 740, 881
HspAI	GCGC	1 cut(s)	169
Kpn2I	TCCGGA	2 cut(s)	850, 946
Ksp22I	TGATCA	2 cut(s)	93, 571
Kzo9I	GATC	5 cut(s)	93, 387, 511, 571, 911
LmnI	GCTCC	2 cut(s)	176, 339
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	45, 78
MaeI	CTAG	4 cut(s)	398, 678, 840, 869
MaeII	ACGT	2 cut(s)	1065, 1090
MaeIII	GTNAC	1 cut(s)	1058
MalI	GATC	5 cut(s)	95, 389, 513, 573, 913
MboI	GATC	5 cut(s)	93, 387, 511, 571, 911
MboII	GAAGA	4 cut(s)	20, 263, 572, 836
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	2 cut(s)	324, 336
MluCI	AATT	5 cut(s)	23, 446, 1029, 1137, 1180
MlyI	GAGTC	4 cut(s)	137, 488, 901, 965
MmeI	TCCRAC	1 cut(s)	974
MroI	TCCGGA	2 cut(s)	850, 946
MseI	TTAA	2 cut(s)	540, 1125
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	3 cut(s)	5, 851, 947
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	781
NdeI	CATATG	2 cut(s)	346, 568
NdeII	GATC	5 cut(s)	93, 387, 511, 571, 911
NlaIII	CATG	4 cut(s)	84, 471, 740, 881
NlaIV	GGNNCC	2 cut(s)	913, 945
NmuCI	GTSAC	1 cut(s)	1058
NspI	RCATGY	1 cut(s)	881
NspV	TTCGAA	1 cut(s)	1184
PaeI	GCATGC	1 cut(s)	881
PagI	TCATGA	1 cut(s)	736
PasI	CCCWGGG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	60, 563, 632
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	4 cut(s)	137, 487, 900, 964
PpsI	GAGTC	4 cut(s)	137, 487, 900, 964
PpuMI	RGGWCCY	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	913, 945
PspPI	GGNCC	3 cut(s)	865, 944, 1008
PspPPI	RGGWCCY	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	911
RsaI	GTAC	3 cut(s)	134, 628, 838
RsaNI	GTAC	3 cut(s)	133, 627, 837
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	540, 1125
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	5 cut(s)	93, 387, 511, 571, 911
Sau96I	GGNCC	3 cut(s)	865, 944, 1008
SchI	GAGTC	4 cut(s)	137, 488, 901, 965
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	324, 336
SfaNI	GCATC	2 cut(s)	45, 78
SfcI	CTRYAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	1184
SinI	GGWCC	3 cut(s)	865, 944, 1008
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	5 cut(s)	23, 446, 1029, 1137, 1180
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	411
SspI	AATATT	2 cut(s)	328, 544
SspMI	CTAG	4 cut(s)	398, 678, 840, 869
SstI	GAGCTC	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	602, 868
TaaI	ACNGT	2 cut(s)	257, 901
TaiI	ACGT	2 cut(s)	1068, 1093
TaqI	TCGA	3 cut(s)	32, 437, 1184
TasI	AATT	5 cut(s)	23, 446, 1029, 1137, 1180
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	60, 563, 632
Tru1I	TTAA	2 cut(s)	540, 1125
Tru9I	TTAA	2 cut(s)	540, 1125
TscAI	CASTG	2 cut(s)	906, 1010
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	6 cut(s)	100, 207, 264, 456, 555, 753
TspGWI	ACGGA	3 cut(s)	62, 163, 1101
TspRI	CASTG	2 cut(s)	906, 1010
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	3 cut(s)	865, 944, 1008
XapI	RAATTY	3 cut(s)	446, 1029, 1180
XceI	RCATGY	1 cut(s)	881
XmaJI	CCTAGG	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	4 cut(s)	398, 678, 840, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.