Rorug03G0069600

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005403
Physical Location & Seq
Reverse (-)
5447073 .. 5450102
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0069600.1

Sequence Viewer

Length: 873 bp
ATGGGTTATGGTTATCTGATTTTGCTGCTTCTTATCAATACACTGGTTCCTTTTTCGTCTGGTAAATCTGACAGAGTGTGCATTTCCCAAGGTAGTCGTTTTCCTCCATTCTCTTCTGAGGGAAAGCCTCCAAAACGGGTCAGCAAGGGACCCAAAGATCTGACTCTTTGCAGGGTGTTCCGCAAAAAAACTTGTTGTGATGTAGCCCAGACACATCCTGCGCTGCTAGCCATTAGGAAGTTGGCTTCGGCAGGGGAAGCTAACTCAGAGTGCTTGCAATTATGGGAATTATTGGAATGTTCTATCTGTGATCCCCGCATTGGTGTGCAGCCAGGACCTCCAGTTATATGTGCCTCTTTCTGTGACAGGGTCTTCAATGCTTGTTCTGAGGCTTACTACTCAACAGATGCAATAACACAGGTTCTAGCACCCTGTGGAGTAAATGATTATGTTTGTGGTAGGGCCTCGGAGTGGATTCTTAATGGCACAGAGTTCTGCCATGCTGCAGGGTTTGCTGTTAAGAGTGATATGTCTGAGAGCCTGGAAGAAACATTTTGCTATGGTGGTAAAGCTAGTCTTGATTTGATTGCGGATTCATGGAAGGTTTCACAATCTGAGGTGCCCGGGAAAGTTCAGAACTTGAGGCTGCTAGAGGATTTCCAGCAGAGAGTGAGAGAAATGCCATATAGCGAACGAGTTTCTTGGGCTGTGGGAGGATTGGTTCTTACAGCAGGCCTGTTGTTTGTAAGAAGGAAAGGTTATAACCAGCGCCACAGACAAGCCGCTTTACAGCGTACCACTAAGAAACTAGAAGCCAAGATGTACCCGAAATCTGCTGATAGTCATGGAAATAGGAAAGTAAGTAAAAGATGA

Protein Analysis

290

Amino Acids

32.07

Weight (kDa)

9.03

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Folate_rec PF03024 48 - 174 3e-15 Folate receptor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 762
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 4 cut(s) 181, 316, 590, 783
AclWI GGATC 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 2 cut(s) 796, 824
AfiI CCNNNNNNNGG 2 cut(s) 320, 471
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 2 cut(s) 331, 540
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 2 cut(s) 260, 572
AluI AGCT 2 cut(s) 260, 572
AlwI GGATC 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 2 cut(s) 462, 733
ApeKI GCWGC 5 cut(s) 25, 223, 328, 503, 646
AspLEI GCGC 2 cut(s) 223, 771
AspS9I GGNCC 3 cut(s) 149, 335, 462
AsuC2I CCSGG 2 cut(s) 624, 625
AsuNHI GCTAGC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 2 cut(s) 149, 335
BaeGI GKGCMC 1 cut(s) 624
BanI GGYRCC 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 364
BbvI GCAGC 5 cut(s) 12, 210, 340, 490, 633
BciT130I CCWGG 2 cut(s) 333, 542
BcnI CCSGG 2 cut(s) 624, 625
BfaI CTAG 5 cut(s) 227, 425, 573, 650, 809
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 772
BglII AGATCT 1 cut(s) 157
BisI GCNGC 6 cut(s) 26, 224, 329, 504, 647, 783
BlsI GCNGC 6 cut(s) 27, 225, 330, 505, 648, 784
Bme1390I CCNGG 4 cut(s) 333, 542, 624, 625
Bme18I GGWCC 2 cut(s) 149, 335
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 3 cut(s) 149, 335, 462
BmiI GGNNCC 4 cut(s) 48, 150, 151, 621
BmrFI CCNGG 4 cut(s) 333, 542, 624, 625
BmsI GCATC 1 cut(s) 397
BmtI GCTAGC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 2 cut(s) 624, 625
BsaJI CCNNGG 3 cut(s) 88, 465, 623
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 471
Bse1I ACTGG 2 cut(s) 48, 341
BseBI CCWGG 2 cut(s) 333, 542
BseDI CCNNGG 3 cut(s) 88, 465, 623
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 320, 471
BseMII CTCAG 5 cut(s) 108, 279, 378, 525, 606
BseNI ACTGG 2 cut(s) 48, 341
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 5 cut(s) 12, 210, 340, 490, 633
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 2 cut(s) 464, 735
BshNI GGYRCC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 320, 471
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 2 cut(s) 464, 735
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 2 cut(s) 157, 310
BspACI CCGC 4 cut(s) 181, 316, 590, 783
BspANI GGCC 2 cut(s) 464, 735
BspCNI CTCAG 5 cut(s) 109, 278, 379, 526, 607
BspLI GGNNCC 4 cut(s) 48, 150, 151, 621
BspMAI CTGCAG 1 cut(s) 508
BspOI GCTAGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 619
BsrI ACTGG 2 cut(s) 48, 341
BssECI CCNNGG 3 cut(s) 88, 465, 623
BssMI GATC 2 cut(s) 157, 310
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 333, 542
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 228, 275, 733
BstDEI CTNAG 6 cut(s) 117, 265, 387, 534, 615, 801
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 772
BstHHI GCGC 2 cut(s) 223, 771
BstKTI GATC 2 cut(s) 160, 313
BstMBI GATC 2 cut(s) 157, 310
BstMWI GCNNNNNNNGC 3 cut(s) 227, 257, 512
BstNI CCWGG 2 cut(s) 333, 542
BstSCI CCNGG 4 cut(s) 331, 540, 622, 623
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 5 cut(s) 12, 210, 340, 490, 633
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 464, 735
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 228, 275, 733
CfoI GCGC 2 cut(s) 223, 771
Cfr13I GGNCC 3 cut(s) 149, 335, 462
Cfr9I CCCGGG 1 cut(s) 623
Csp6I GTAC 2 cut(s) 795, 823
CviAII CATG 3 cut(s) 500, 597, 845
CviQI GTAC 2 cut(s) 795, 823
DdeI CTNAG 6 cut(s) 117, 265, 387, 534, 615, 801
DpnI GATC 2 cut(s) 159, 312
DpnII GATC 2 cut(s) 157, 310
DraIII CACNNNGTG 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 149, 335
Eco88I CYCGRG 1 cut(s) 623
EcoO109I RGGNCCY 3 cut(s) 149, 335, 462
EcoRII CCWGG 2 cut(s) 331, 540
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 3 cut(s) 503, 600, 848
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 162
FatI CATG 3 cut(s) 499, 596, 844
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 6 cut(s) 26, 224, 329, 504, 647, 783
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 6 cut(s) 26, 224, 329, 504, 647, 783
FspBI CTAG 5 cut(s) 227, 425, 573, 650, 809
GlaI GCGC 2 cut(s) 222, 770
GluI GCNGC 6 cut(s) 26, 224, 329, 504, 647, 783
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 772
HaeIII GGCC 2 cut(s) 464, 735
HapII CCGG 1 cut(s) 624
HhaI GCGC 2 cut(s) 223, 771
Hin1II CATG 3 cut(s) 503, 600, 848
Hin6I GCGC 2 cut(s) 221, 769
HinP1I GCGC 2 cut(s) 221, 769
HinfI GANTC 3 cut(s) 163, 475, 593
HpaII CCGG 1 cut(s) 624
Hpy188III TCNNGA 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 595, 744
HpyCH4V TGCA 6 cut(s) 81, 171, 277, 328, 410, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 257, 512
HpyF3I CTNAG 6 cut(s) 117, 265, 387, 534, 615, 801
Hsp92II CATG 3 cut(s) 503, 600, 848
HspAI GCGC 2 cut(s) 221, 769
KflI GGGWCCC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 157, 310
Lsp1109I GCAGC 5 cut(s) 12, 210, 340, 490, 633
LweI GCATC 1 cut(s) 397
MaeI CTAG 5 cut(s) 227, 425, 573, 650, 809
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 159, 312
MboI GATC 2 cut(s) 157, 310
MboII GAAGA 3 cut(s) 105, 364, 557
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 2 cut(s) 278, 287
MlyI GAGTC 1 cut(s) 157
MseI TTAA 2 cut(s) 480, 519
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 4 cut(s) 333, 542, 624, 625
MvaI CCWGG 2 cut(s) 333, 542
MwoI GCNNNNNNNGC 3 cut(s) 227, 257, 512
NciI CCSGG 2 cut(s) 624, 625
NdeII GATC 2 cut(s) 157, 310
NheI GCTAGC 1 cut(s) 226
NlaIII CATG 3 cut(s) 503, 600, 848
NlaIV GGNNCC 4 cut(s) 48, 150, 151, 621
NmuCI GTSAC 1 cut(s) 362
PceI AGGCCT 1 cut(s) 735
PfeI GAWTC 2 cut(s) 475, 593
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 6 cut(s) 27, 225, 330, 505, 648, 784
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 2 cut(s) 149, 335
PsiI TTATAA 1 cut(s) 762
Psp5II RGGWCCY 2 cut(s) 149, 335
Psp6I CCWGG 2 cut(s) 331, 540
PspGI CCWGG 2 cut(s) 331, 540
PspN4I GGNNCC 4 cut(s) 48, 150, 151, 621
PspPI GGNCC 3 cut(s) 149, 335, 462
PspPPI RGGWCCY 2 cut(s) 149, 335
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 2 cut(s) 796, 824
RsaNI GTAC 2 cut(s) 795, 823
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 480, 519
SatI GCNGC 6 cut(s) 26, 224, 329, 504, 647, 783
Sau3AI GATC 2 cut(s) 157, 310
Sau96I GGNCC 3 cut(s) 149, 335, 462
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 4 cut(s) 333, 542, 624, 625
SduI GDGCHC 1 cut(s) 624
SetI ASST 8 cut(s) 94, 262, 340, 423, 574, 606, 621, 760
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 149, 335
SmaI CCCGGG 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 640
SmoI CTYRAG 1 cut(s) 640
Sse9I AATT 2 cut(s) 278, 287
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 4 cut(s) 181, 316, 590, 783
SspMI CTAG 5 cut(s) 227, 425, 573, 650, 809
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 4 cut(s) 331, 540, 622, 623
StyI CCWWGG 1 cut(s) 88
TasI AATT 2 cut(s) 278, 287
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 2 cut(s) 475, 593
Tru1I TTAA 2 cut(s) 480, 519
Tru9I TTAA 2 cut(s) 480, 519
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 5 cut(s) 25, 223, 328, 503, 646
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 585
TspMI CCCGGG 1 cut(s) 623
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 149, 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmaI CCCGGG 1 cut(s) 623
XspI CTAG 5 cut(s) 227, 425, 573, 650, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.