RLG00000012727

Domain of unknown function (DUF4091)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005403
Physical Location & Seq
Forward (+)
21671343 .. 21672288
946 bp
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UTR
Exon/CDS
Intron
RLM00000012727

Sequence Viewer

Length: 348 bp
ATGGTGTATGTAGATCACCCATTTTCGATTACCGACGTCATTGTCGGCGGCACCCTCATGGCCTATAATCGCGTCGGCGGCGAAAAAGCTCATAGTACCCTAATATCCTTCTACTCCCTCAGTGGTGACGCAGCGAAGCAATACACGCAGAAACAAATTGAGATATTGAGGACAAAGTCTCACTGGAAGAAAGAATATTTTTATTTGAGGGATGAGCACACAAATGGTGGAGGGGGTTCTGCTTTCATTCCCATTGAAGAATATGGAACCGAGTTTAAGCCCAAGAAGGCTGTGAGGCTCTTGTTAATTCACTTAAGTGATAGTAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4091

Protein Analysis

116

Amino Acids

13.05

Weight (kDa)

7.02

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 48, 78
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 97
AflII CTTAAG 1 cut(s) 313
AgsI TTSAA 1 cut(s) 257
AleI CACNNNNGTG 1 cut(s) 315
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 183
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 8, 137
BanI GGYRCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 313
BisI GCNGC 3 cut(s) 49, 79, 132
BlsI GCNGC 3 cut(s) 50, 80, 133
BmiI GGNNCC 2 cut(s) 52, 268
BsaHI GRCGYC 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 13, 334
BspACI CCGC 2 cut(s) 48, 78
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 52, 268
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 313
BsrI ACTGG 1 cut(s) 188
BssMI GATC 2 cut(s) 13, 334
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 2 cut(s) 16, 337
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 13, 334
BstMWI GCNNNNNNNGC 2 cut(s) 78, 145
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 127, 181
CseI GACGC 2 cut(s) 61, 137
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 62, 89, 280, 290, 298
CviKI_1 RGCY 5 cut(s) 62, 89, 280, 290, 298
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 15, 336
DpnII GATC 2 cut(s) 13, 334
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 9, 59, 66, 93, 264, 333, 346
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 49, 79, 132
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 49, 79, 132
GluI GCNGC 3 cut(s) 49, 79, 132
HaeIII GGCC 1 cut(s) 62
HgaI GACGC 2 cut(s) 61, 137
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 61
HphI GGTGA 2 cut(s) 8, 137
Hpy99I CGWCG 2 cut(s) 38, 77
HpyAV CCTTC 2 cut(s) 118, 280
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 145
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 2 cut(s) 13, 334
LpnPI CCDG 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 143
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 125, 323
MalI GATC 2 cut(s) 15, 336
MboI GATC 2 cut(s) 13, 334
MboII GAAGA 2 cut(s) 199, 269
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 156, 306
MnlI CCTC 6 cut(s) 65, 128, 162, 201, 224, 288
MseI TTAA 3 cut(s) 276, 305, 314
MslI CAYNNNNRTG 3 cut(s) 56, 222, 315
MspCI CTTAAG 1 cut(s) 313
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 78, 145
NdeII GATC 2 cut(s) 13, 334
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 52, 268
NmuCI GTSAC 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 50, 80, 133
PspN4I GGNNCC 2 cut(s) 52, 268
PsyI GACNNNGTC 1 cut(s) 175
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 3 cut(s) 56, 222, 315
SaqAI TTAA 3 cut(s) 276, 305, 314
SatI GCNGC 3 cut(s) 49, 79, 132
Sau3AI GATC 2 cut(s) 13, 334
SduI GDGCHC 1 cut(s) 219
SetI ASST 2 cut(s) 39, 91
SgeI CNNG 7 cut(s) 70, 83, 157, 196, 283, 295, 313
SmiMI CAYNNNNRTG 3 cut(s) 56, 222, 315
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 2 cut(s) 156, 306
SsiI CCGC 2 cut(s) 48, 78
SspI AATATT 1 cut(s) 197
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 156, 306
TauI GCSGC 2 cut(s) 51, 81
Tru1I TTAA 3 cut(s) 276, 305, 314
Tru9I TTAA 3 cut(s) 276, 305, 314
TscAI CASTG 2 cut(s) 127, 188
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 2 cut(s) 127, 188
Tth111I GACNNNGTC 1 cut(s) 175
Vha464I CTTAAG 1 cut(s) 313
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.