Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Reverse (-)

17508122 .. 17509952

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15120.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAACTGCTCGGTTCGAGCTCGCCTCCTCCCCCGTGCTTTCAATTTCAACTTCCAATTATCCGTCGCACCAAACGGCCGCGTTCGGGGACCACAGCCACCGGTTCTTCGCTAGAATCGGACCGCCACTCCCCCAGAGGATCGTCGGCGATGAAGAAAGTTGAACGCTTTTCGGTTCAGAAAGTTACCGGCGACGGGCGCTGTCTATTTCGTGCTCTGGTGAAGGGAATGGCTTTGAATAGAGGGGTTCCTCTTAGCCCAAGGCAAGAGAAAGATGATGCAGACGAACTACGAATGGCTGTGAAAGAGGTTATATGCGAAGATGAGGAAGGGCGCCTTAAGTATGAACCTGCTTTGGTGGCAATCACTGTCGATGAGTCCTTAAAACGTTACTGCCAGCGCATCAATAGACCGGATTTCTGGGGAGGAGAGTCTGAGCTGCTGGTGCTGTCAAAGTTGTGTGGGCAGCCAATCACTGTTTACATACCAGAGCATGAGCATACAAATGGTGGACTGGGTTCTGGTTTCATTCCGATTGCAGAATATGGAAGCGAGTTTACCAAAGGTTCTAGAAACAAAAAGCCCAGAAAGGTTGTGAGGCTCCTCTACAGTGGCAGGAACCAAGATCGATCTGCTTGTATGAGAGAGAGAGAGAGATTTCGAACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

224

Amino Acids

25.13

Weight (kDa)

9.48

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	80, 124
AclI	AACGTT	1 cut(s)	388
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	86, 195
AflII	CTTAAG	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	44, 50, 164, 238
AluBI	AGCT	2 cut(s)	21, 439
AluI	AGCT	2 cut(s)	21, 439
Alw21I	GWGCWC	2 cut(s)	23, 217
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	439, 466
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	3 cut(s)	201, 336, 402
AspS9I	GGNCC	2 cut(s)	90, 121
AsuHPI	GGTGA	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	661
AvaII	GGWCC	2 cut(s)	90, 121
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	541, 573
Bbv12I	GWGCWC	2 cut(s)	23, 217
BbvI	GCAGC	2 cut(s)	426, 478
BceAI	ACGGC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	113, 570
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	2 cut(s)	202, 337
BfrI	CTTAAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	80, 440, 467
BlsI	GCNGC	3 cut(s)	81, 441, 468
Bme18I	GGWCC	2 cut(s)	90, 121
BmgT120I	GGNCC	2 cut(s)	90, 121
BmiI	GGNNCC	5 cut(s)	91, 249, 335, 602, 620
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	268, 411
BmuI	ACTGGG	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu14I	TTCGAA	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	2 cut(s)	101, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 195
Bse118I	RCCGGY	2 cut(s)	101, 188
Bse1I	ACTGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	86, 195
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	3 cut(s)	18, 441, 593
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	426, 478
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	23, 217
BsiSI	CCGG	3 cut(s)	102, 189, 413
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	86, 195
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	23, 217
Bsp143I	GATC	3 cut(s)	140, 625, 629
BspACI	CCGC	2 cut(s)	80, 124
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	5 cut(s)	91, 249, 335, 602, 620
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	661
BspT107I	GGYRCC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	338
BsrFI	RCCGGY	2 cut(s)	101, 188
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	2 cut(s)	101, 188
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	3 cut(s)	140, 625, 629
BssNI	GRCGYC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	370, 478, 611
BstACI	GRCGYC	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	2 cut(s)	23, 398
BstDEI	CTNAG	2 cut(s)	254, 435
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	2 cut(s)	202, 337
BstHHI	GCGC	3 cut(s)	201, 336, 402
BstKTI	GATC	3 cut(s)	143, 628, 632
BstMBI	GATC	3 cut(s)	140, 625, 629
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 359, 445
BstSFI	CTRYAG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	426, 478
BstZI	CGGCCG	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	628
BtgZI	GCGATG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	366, 474, 616
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	23, 398
CfoI	GCGC	3 cut(s)	201, 336, 402
Cfr10I	RCCGGY	2 cut(s)	101, 188
Cfr13I	GGNCC	2 cut(s)	90, 121
ClaI	ATCGAT	1 cut(s)	628
CpoI	CGGWCCG	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	101
CspI	CGGWCCG	1 cut(s)	121
CviAII	CATG	1 cut(s)	494
DdeI	CTNAG	2 cut(s)	254, 435
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	3 cut(s)	142, 627, 631
DpnII	GATC	3 cut(s)	140, 625, 629
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	90, 121
Eco52I	CGGCCG	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	497
FaiI	YATR	8 cut(s)	314, 316, 345, 485, 495, 501, 546, 641
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	80, 440, 467
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	80, 440, 467
FspBI	CTAG	2 cut(s)	113, 570
GlaI	GCGC	3 cut(s)	200, 335, 401
GluI	GCNGC	3 cut(s)	80, 440, 467
HaeII	RGCGCY	2 cut(s)	202, 337
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	3 cut(s)	102, 189, 413
HhaI	GCGC	3 cut(s)	201, 336, 402
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	3 cut(s)	199, 334, 400
HinP1I	GCGC	3 cut(s)	199, 334, 400
HinfI	GANTC	3 cut(s)	116, 377, 431
HpaII	CCGG	3 cut(s)	102, 189, 413
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	481, 512, 558
Hpy188I	TCNGA	4 cut(s)	121, 180, 436, 534
Hpy188III	TCNNGA	1 cut(s)	570
Hpy8I	GTNNAC	3 cut(s)	481, 512, 558
Hpy99I	CGWCG	3 cut(s)	69, 148, 197
HpyAV	CCTTC	2 cut(s)	217, 323
HpyCH4III	ACNGT	3 cut(s)	370, 478, 611
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	2 cut(s)	281, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 359, 445
HpyF3I	CTNAG	2 cut(s)	254, 435
HpySE526I	ACGT	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	3 cut(s)	199, 334, 400
KasI	GGCGCC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	140, 625, 629
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	2 cut(s)	426, 478
LweI	GCATC	2 cut(s)	268, 411
MaeI	CTAG	2 cut(s)	113, 570
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	184, 389
MalI	GATC	3 cut(s)	142, 627, 631
MboI	GATC	3 cut(s)	140, 625, 629
MboII	GAAGA	3 cut(s)	99, 166, 332
MhlI	GDGCHC	2 cut(s)	23, 217
MluCI	AATT	2 cut(s)	44, 57
Mly113I	GGCGCC	1 cut(s)	334
MlyI	GAGTC	2 cut(s)	386, 440
MseI	TTAA	2 cut(s)	339, 383
MslI	CAYNNNNRTG	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	3 cut(s)	102, 189, 413
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	198, 359, 445
NarI	GGCGCC	1 cut(s)	334
NdeII	GATC	3 cut(s)	140, 625, 629
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	5 cut(s)	91, 249, 335, 602, 620
NspV	TTCGAA	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	81, 441, 468
PleI	GAGTC	2 cut(s)	385, 439
PluTI	GGCGCC	1 cut(s)	337
PpsI	GAGTC	2 cut(s)	385, 439
Psp124BI	GAGCTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	388
PspN4I	GGNNCC	5 cut(s)	91, 249, 335, 602, 620
PspPI	GGNCC	2 cut(s)	90, 121
RseI	CAYNNNNRTG	1 cut(s)	504
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	339, 383
SatI	GCNGC	3 cut(s)	80, 440, 467
Sau3AI	GATC	3 cut(s)	140, 625, 629
Sau96I	GGNCC	2 cut(s)	90, 121
SchI	GAGTC	2 cut(s)	386, 440
SduI	GDGCHC	2 cut(s)	23, 217
SetI	ASST	7 cut(s)	23, 312, 352, 391, 441, 568, 594
SfaNI	GCATC	2 cut(s)	268, 411
SfcI	CTRYAG	1 cut(s)	607
SfoI	GGCGCC	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	2 cut(s)	90, 121
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	44, 57
SsiI	CCGC	2 cut(s)	80, 124
SspDI	GGCGCC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	113, 570
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	370, 478, 611
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	17, 372, 628, 661
TasI	AATT	2 cut(s)	44, 57
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	339, 383
Tru9I	TTAA	2 cut(s)	339, 383
TscAI	CASTG	3 cut(s)	373, 481, 616
TseI	GCWGC	2 cut(s)	439, 466
TspDTI	ATGAA	3 cut(s)	167, 360, 517
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	373, 481, 616
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	90, 121
XbaI	TCTAGA	1 cut(s)	569
XspI	CTAG	2 cut(s)	113, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.