Rh3AG126400

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005403
Physical Location & Seq
Forward (+)
10931452 .. 10934457
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG126400.1

Sequence Viewer

Length: 507 bp
ATGGCGCACAAGCTTTCAAACGAGGCTGTTCTGGAGCAGCTCAGGAATGGATTTGCTCGGTTCGAGCTCGTCTCCTCCCCTCTTCTCTCAATTTCAACGTCCAATTCTCAGGCAAACGCCACGCCGTTTCTCGGAGACTACAGCCACCGGTTCTTCGCTAGAATTGGACCGCCACTAGGCAGAGGATCTTCGGCCATGAGGAAAGTCGAACGCTATTCCGTTCAGAGAGTTACCGGTGATGGACGCTGTCTATTTCGTGCACTGGTAAAAGGGATGGCAGCAAATAAAGGGTCACCTCTTAGCCCAAGGGAAGAGAGAGACACTGCAGATGAGCTACGGATGGCTGTGAAAGAGGTTATATGCGAAAATGAGGAAGAACGCCCCCAGTATGAAGCAGCTATAGTGGCAATTACTGTCGATGAATCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGAGGAGAGTCGGAGCTGCTGGTATGTACTCCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

168

Amino Acids

18.8

Weight (kDa)

6.75

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 79 - 166 7.2e-08 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclI AACGTT 1 cut(s) 433
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 131, 176
AgeI ACCGGT 2 cut(s) 147, 233
AgsI TTSAA 2 cut(s) 18, 96
AluBI AGCT 6 cut(s) 13, 40, 67, 334, 398, 484
AluI AGCT 6 cut(s) 13, 40, 67, 334, 398, 484
Alw21I GWGCWC 2 cut(s) 69, 262
Alw26I GTCTC 3 cut(s) 76, 129, 312
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 4 cut(s) 37, 278, 395, 484
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AsiGI ACCGGT 2 cut(s) 147, 233
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 248, 285
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 262
BbvI GCAGC 4 cut(s) 49, 290, 407, 471
BccI CCATC 3 cut(s) 233, 268, 334
BceAI ACGGC 1 cut(s) 109
BcoDI GTCTC 3 cut(s) 76, 129, 312
BfaI CTAG 2 cut(s) 159, 176
BfmI CTRYAG 3 cut(s) 139, 324, 399
BisI GCNGC 4 cut(s) 38, 279, 396, 485
BlsI GCNGC 4 cut(s) 39, 280, 397, 486
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 2 cut(s) 147, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 176
Bse118I RCCGGY 2 cut(s) 147, 233
Bse1I ACTGG 2 cut(s) 267, 385
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 279, 345
BseLI CCNNNNNNNGG 2 cut(s) 131, 176
BseMII CTCAG 2 cut(s) 55, 122
BseNI ACTGG 2 cut(s) 267, 385
BseRI GAGGAG 2 cut(s) 64, 486
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 4 cut(s) 49, 290, 407, 471
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 2 cut(s) 147, 233
BsiHKAI GWGCWC 2 cut(s) 69, 262
BsiSI CCGG 2 cut(s) 148, 234
BslI CCNNNNNNNGG 2 cut(s) 131, 176
BsmAI GTCTC 3 cut(s) 76, 129, 312
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 69, 262
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 54, 121
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 147, 233
BsrI ACTGG 2 cut(s) 267, 385
BssAI RCCGGY 2 cut(s) 147, 233
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 87, 306
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 41, 108, 299
BstEII GGTNACC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 279, 345
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 3 cut(s) 76, 129, 312
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstPI GGTNACC 1 cut(s) 291
BstSFI CTRYAG 3 cut(s) 139, 324, 399
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 49, 290, 407, 471
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 279, 345
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 260, 321
Cac8I GCNNGC 1 cut(s) 443
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 147, 233
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 495
CspAI ACCGGT 2 cut(s) 147, 233
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 3 cut(s) 41, 108, 299
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 87, 306
EarI CTCTTC 2 cut(s) 87, 306
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 199
FaiI YATR 6 cut(s) 197, 359, 361, 390, 401, 493
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 38, 279, 396, 485
FokI GGATG 2 cut(s) 286, 352
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 38, 279, 396, 485
FspBI CTAG 2 cut(s) 159, 176
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 38, 279, 396, 485
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 148, 234
HgaI GACGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 422, 447, 476
HpaII CCGG 2 cut(s) 148, 234
HphI GGTGA 2 cut(s) 248, 285
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 134, 225, 481
Hpy188III TCNNGA 3 cut(s) 32, 43, 500
Hpy8I GTNNAC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 98, 433
HpyCH4V TGCA 2 cut(s) 260, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 3 cut(s) 41, 108, 299
HpySE526I ACGT 2 cut(s) 98, 433
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 34, 481
Lsp1109I GCAGC 4 cut(s) 49, 290, 407, 471
MaeI CTAG 2 cut(s) 159, 176
MaeII ACGT 2 cut(s) 98, 433
MaeIII GTNAC 3 cut(s) 229, 291, 434
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 5 cut(s) 74, 145, 180, 323, 386
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 2 cut(s) 69, 262
MluCI AATT 4 cut(s) 90, 103, 162, 408
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 9 cut(s) 16, 85, 90, 176, 192, 306, 346, 364, 464
MseI TTAA 1 cut(s) 428
MspI CCGG 2 cut(s) 148, 234
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 1 cut(s) 185
NlaIII CATG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 422, 447
PflFI GACNNNGTC 1 cut(s) 246
PinAI ACCGGT 2 cut(s) 147, 233
PkrI GCNGC 4 cut(s) 39, 280, 397, 486
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 246
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 4 cut(s) 38, 279, 396, 485
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 485
SduI GDGCHC 2 cut(s) 69, 262
SfcI CTRYAG 3 cut(s) 139, 324, 399
SinI GGWCC 1 cut(s) 167
Sse9I AATT 4 cut(s) 90, 103, 162, 408
SsiI CCGC 1 cut(s) 170
SspMI CTAG 2 cut(s) 159, 176
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 2 cut(s) 101, 436
TaqI TCGA 3 cut(s) 63, 207, 417
TasI AATT 4 cut(s) 90, 103, 162, 408
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 2 cut(s) 422, 447
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 2 cut(s) 267, 328
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 4 cut(s) 37, 278, 395, 484
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 405, 435
TspGWI ACGGA 2 cut(s) 208, 352
TspRI CASTG 2 cut(s) 267, 328
Tth111I GACNNNGTC 1 cut(s) 246
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 167
XspI CTAG 2 cut(s) 159, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.