RLG00000018964

Domain of unknown function (DUF4091)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005403
Physical Location & Seq
Reverse (-)
43715867 .. 43716807
941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018964

Sequence Viewer

Length: 381 bp
ATGGCGTATGTAGATCACCCATTTTCGATTACCGACGTCACTGTCGTCGGTACCCTCATGGCCTATAATCGCGTCGGCGGCGAAAAAGCTCACGATACCCTAATATCCTTCTACTGCCACAGTGGTGACGCAGCGAAGCAATACACGCAGAAACAAATTGAGATATTGAGGACAAAGACTCACCGGAAGAAAGAATATTTTTATTTGTGGGATGAGTCCATCAATTGTAATGTTTGGGTTGAACTACAACACACAAATGGTGGAGGGGGTTCTGCTTTCATTCCCATTGAAGAATATGGAACTGAGTTTAAGCCCAAGAAGGCTGTGAGGTTCTTGTTAATTCACTTAAGTGATAGGAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4091

Protein Analysis

127

Amino Acids

14.53

Weight (kDa)

6.64

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 39
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 1 cut(s) 72
AciI CCGC 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 52
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 2 cut(s) 242, 290
AleI CACNNNNGTG 2 cut(s) 123, 348
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 8, 137, 173
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 79, 132
BlsI GCNGC 2 cut(s) 80, 133
BmiI GGNNCC 2 cut(s) 52, 359
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 183
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 184
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 13, 367
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 52, 359
BspT107I GGYRCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 346
BssMI GATC 2 cut(s) 13, 367
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 43, 122
BstACI GRCGYC 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 2 cut(s) 16, 370
BstMBI GATC 2 cut(s) 13, 367
BstMWI GCNNNNNNNGC 2 cut(s) 78, 145
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 39, 127
CseI GACGC 2 cut(s) 61, 137
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 62, 89, 313, 323
CviKI_1 RGCY 4 cut(s) 62, 89, 313, 323
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 15, 369
DpnII GATC 2 cut(s) 13, 367
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 9, 59, 66, 297, 366, 379
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 79, 132
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 79, 132
GluI GCNGC 2 cut(s) 79, 132
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 184
HgaI GACGC 2 cut(s) 61, 137
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 178, 215
HpaII CCGG 1 cut(s) 184
HphI GGTGA 3 cut(s) 8, 137, 173
Hpy188III TCNNGA 1 cut(s) 92
Hpy99I CGWCG 3 cut(s) 38, 50, 77
HpyAV CCTTC 2 cut(s) 118, 313
HpyCH4III ACNGT 2 cut(s) 43, 122
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 145
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 61
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 13, 367
LpnPI CCDG 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 143
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 37, 125
MalI GATC 2 cut(s) 15, 369
MboI GATC 2 cut(s) 13, 367
MboII GAAGA 2 cut(s) 199, 302
MfeI CAATTG 1 cut(s) 223
MluCI AATT 3 cut(s) 156, 223, 339
MlyI GAGTC 2 cut(s) 172, 224
MnlI CCTC 4 cut(s) 65, 162, 257, 321
MseI TTAA 3 cut(s) 309, 338, 347
MslI CAYNNNNRTG 3 cut(s) 123, 255, 348
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 223
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 78, 145
NdeII GATC 2 cut(s) 13, 367
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 52, 359
NmuCI GTSAC 2 cut(s) 37, 125
OliI CACNNNNGTG 2 cut(s) 123, 348
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PkrI GCNGC 2 cut(s) 80, 133
PleI GAGTC 2 cut(s) 172, 223
PpsI GAGTC 2 cut(s) 172, 223
PspN4I GGNNCC 2 cut(s) 52, 359
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 3 cut(s) 123, 255, 348
SaqAI TTAA 3 cut(s) 309, 338, 347
SatI GCNGC 2 cut(s) 79, 132
Sau3AI GATC 2 cut(s) 13, 367
SchI GAGTC 2 cut(s) 172, 224
SetI ASST 3 cut(s) 39, 91, 332
SgeI CNNG 7 cut(s) 70, 83, 104, 157, 196, 328, 346
SmiMI CAYNNNNRTG 3 cut(s) 123, 255, 348
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 3 cut(s) 156, 223, 339
SsiI CCGC 1 cut(s) 78
SspI AATATT 1 cut(s) 197
TaaI ACNGT 2 cut(s) 43, 122
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 156, 223, 339
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 3 cut(s) 309, 338, 347
Tru9I TTAA 3 cut(s) 309, 338, 347
TscAI CASTG 2 cut(s) 46, 127
TseFI GTSAC 2 cut(s) 37, 125
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 2 cut(s) 37, 125
TspDTI ATGAA 1 cut(s) 268
TspRI CASTG 2 cut(s) 46, 127
Vha464I CTTAAG 1 cut(s) 346
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.