Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Reverse (-)

23473818 .. 23475453

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTTTGAATAAAGGGGTTCCTCTTAGCCCAAGGCAAGAGAAAGATGATGCAGACGAACTACGGATGGCTGTGAAAGAGGTTATATGCGAAGATGAGGAAGAGCGCCTTAAGTATGAACCTGCTCTGGTTGCAATCATCGTCGATGAGTCCTTAAAGCGCGCATCAATAGACCGGATTTCTGGGGAGGAGAGTCCGAGCTGCTGGTCAGTCAGTTTTCTTGATCAGACTATTTCCTTTCTAACACTTTGTCGCTGTGTGCTGTCAAAGTTATGTGGGCAGCCAATCGCTGTTTACATACCGGAGCATGAGCATACAAGTGGTGGACGGGGTTCCGGTTTCATTCCGATTGCAGAATATGGAAGCGAGTTTACTAAAGGTTCTAGAAACAAGGAGCCCAGAAAGGTTGTGAGACTCCTATACAGTGGCAGGAACCATTATGATCTGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

5.46

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccII	CGCG	1 cut(s)	162
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	201, 280
AspLEI	GCGC	3 cut(s)	108, 162, 164
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	355, 387
BbvI	GCAGC	2 cut(s)	188, 292
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	109
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	202, 281
BlsI	GCNGC	2 cut(s)	203, 282
BmiI	GGNNCC	4 cut(s)	21, 334, 396, 434
BmsI	GCATC	2 cut(s)	40, 173
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	3 cut(s)	174, 301, 335
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	72
BsePI	GCGCGC	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	188, 292
Bsh1236I	CGCG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	175, 302, 336
BsmAI	GTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	223, 442
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	21, 334, 396, 434
BspMI	ACCTGC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	32
BssHII	GCGCGC	1 cut(s)	160
BssMI	GATC	2 cut(s)	223, 442
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	108, 162, 164
BstKTI	GATC	2 cut(s)	226, 445
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	223, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	188, 292
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	3 cut(s)	108, 162, 164
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	6 cut(s)	5, 30, 71, 201, 283, 397
CviKI_1	RGCY	6 cut(s)	5, 30, 71, 201, 283, 397
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	225, 444
DpnII	GATC	2 cut(s)	223, 442
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	311
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	202, 281
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	202, 281
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	3 cut(s)	107, 161, 163
GluI	GCNGC	2 cut(s)	202, 281
HaeII	RGCGCY	1 cut(s)	109
HapII	CCGG	3 cut(s)	175, 302, 336
HhaI	GCGC	3 cut(s)	108, 162, 164
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	3 cut(s)	106, 160, 162
HinP1I	GCGC	3 cut(s)	106, 160, 162
HinfI	GANTC	3 cut(s)	149, 193, 414
HpaII	CCGG	3 cut(s)	175, 302, 336
Hpy166II	GTNNAC	3 cut(s)	295, 326, 372
Hpy188I	TCNGA	3 cut(s)	198, 228, 348
Hpy188III	TCNNGA	2 cut(s)	221, 384
Hpy8I	GTNNAC	3 cut(s)	295, 326, 372
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	53, 134, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	3 cut(s)	106, 160, 162
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 442
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	304, 394
LpnPI	CCDG	9 cut(s)	113, 135, 168, 188, 190, 315, 349, 412, 415
Lsp1109I	GCAGC	2 cut(s)	188, 292
LweI	GCATC	2 cut(s)	40, 173
MaeI	CTAG	1 cut(s)	384
MalI	GATC	2 cut(s)	225, 444
MboI	GATC	2 cut(s)	223, 442
MboII	GAAGA	2 cut(s)	104, 113
MhlI	GDGCHC	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	158, 202, 408
MnlI	CCTC	4 cut(s)	33, 73, 91, 181
MseI	TTAA	2 cut(s)	111, 155
MslI	CAYNNNNRTG	1 cut(s)	318
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	3 cut(s)	175, 302, 336
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	223, 442
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	4 cut(s)	21, 334, 396, 434
PauI	GCGCGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	203, 282
PleI	GAGTC	3 cut(s)	157, 201, 408
PpsI	GAGTC	3 cut(s)	157, 201, 408
PspN4I	GGNNCC	4 cut(s)	21, 334, 396, 434
PteI	GCGCGC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	111, 155
SatI	GCNGC	2 cut(s)	202, 281
Sau3AI	GATC	2 cut(s)	223, 442
SchI	GAGTC	3 cut(s)	158, 202, 408
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	5 cut(s)	84, 124, 203, 382, 408
SfaNI	GCATC	2 cut(s)	40, 173
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	111, 155
Tru9I	TTAA	2 cut(s)	111, 155
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	201, 280
TspDTI	ATGAA	2 cut(s)	132, 331
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	383
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.