RLG00000024732

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005403
Physical Location & Seq
Reverse (-)
38612819 .. 38615423
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024732

Sequence Viewer

Length: 687 bp
ATGGCGCACAAGCTTTCGAACGAGGCTGTTCTGGAGCAGCTCAGGAATGGATTTGCTCAGTTCGAGCTCGTCTCCTCCCCTCTTCTCTCAATTTCAACGTCCAATTCTCAGGCAAACGCCACGCCGTTTCTCGGAGACTACAGCCACCGGTTCTTCGCTAGAATTGGACCGCCACTAGGCAGAGGATCTTCGGCCATGAGGAAAGTCGAACGCTATTCCGTTCAGAGAGTTACCGGTGATGGACGCTGTCTATTTCGTGCACTGGTAAAAGGGATGGCAGCAAATAAAGGGTCACCTCTTAGCCCAAGGGAAGAGAGAGACAATGCAGATGAACTACGGATGGCTGTGAAAGAGGTTATATGCGAAAATGAGGAAGAACGCCCCCAGTATGAAGCAGCTATAGTGGCAATTACTGTCGATGAATCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGAGGAGAGTCGGAGCTGCTGGTGCTCTCAAAATTGTGTGGACAGCCAATCATCGTCTATATTCCAGAGCATGAGCACACAAATGGTGGAAGGAGTTCTGGTTTCATTCCCATTGCAGAATATGGAAGCGAGTTTAGTAAAGGTTCGAGAAACAGAAAGCCGAGGAAGGCCGTGAGGCTCTTGTTCAGTGGCAGGAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

229

Amino Acids

25.54

Weight (kDa)

9.08

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 79 - 186 1.2e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclI AACGTT 1 cut(s) 433
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 131, 176
AgeI ACCGGT 2 cut(s) 147, 233
AgsI TTSAA 1 cut(s) 96
AluBI AGCT 5 cut(s) 13, 40, 67, 398, 484
AluI AGCT 5 cut(s) 13, 40, 67, 398, 484
Alw21I GWGCWC 4 cut(s) 69, 262, 495, 546
Alw26I GTCTC 3 cut(s) 76, 129, 312
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 1 cut(s) 193
AoxI GGCC 2 cut(s) 192, 636
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 4 cut(s) 37, 278, 395, 484
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AsiGI ACCGGT 2 cut(s) 147, 233
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 248, 285
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 4 cut(s) 69, 262, 495, 546
BbvI GCAGC 4 cut(s) 49, 290, 407, 471
BccI CCATC 3 cut(s) 233, 268, 334
BceAI ACGGC 2 cut(s) 109, 623
BcoDI GTCTC 3 cut(s) 76, 129, 312
BfaI CTAG 2 cut(s) 159, 176
BfmI CTRYAG 2 cut(s) 139, 399
BisI GCNGC 4 cut(s) 38, 279, 396, 485
BlsI GCNGC 4 cut(s) 39, 280, 397, 486
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 665
BmrI ACTGGG 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 41
Bpu14I TTCGAA 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 305, 629
BsaWI WCCGGW 2 cut(s) 147, 233
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 176
Bse118I RCCGGY 2 cut(s) 147, 233
Bse1I ACTGG 2 cut(s) 267, 385
Bse3DI GCAATG 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 305, 629
BseGI GGATG 2 cut(s) 279, 345
BseLI CCNNNNNNNGG 2 cut(s) 131, 176
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 55, 71, 122
BseNI ACTGG 2 cut(s) 267, 385
BseRI GAGGAG 2 cut(s) 64, 486
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 4 cut(s) 49, 290, 407, 471
BshFI GGCC 2 cut(s) 194, 638
BshTI ACCGGT 2 cut(s) 147, 233
BsiHKAI GWGCWC 4 cut(s) 69, 262, 495, 546
BsiSI CCGG 2 cut(s) 148, 234
BslI CCNNNNNNNGG 2 cut(s) 131, 176
BsmAI GTCTC 3 cut(s) 76, 129, 312
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 194, 638
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 4 cut(s) 69, 262, 495, 546
Bsp143I GATC 2 cut(s) 185, 673
BspACI CCGC 1 cut(s) 170
BspANI GGCC 2 cut(s) 194, 638
BspCNI CTCAG 3 cut(s) 54, 70, 121
BspLI GGNNCC 1 cut(s) 665
BspPI GGATC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 2 cut(s) 147, 233
BsrI ACTGG 2 cut(s) 267, 385
BssAI RCCGGY 2 cut(s) 147, 233
BssECI CCNNGG 2 cut(s) 305, 629
BssMI GATC 2 cut(s) 185, 673
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 87, 306
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 4 cut(s) 41, 57, 108, 299
BstEII GGTNACC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 279, 345
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 188, 676
BstMAI GTCTC 3 cut(s) 76, 129, 312
BstMBI GATC 2 cut(s) 185, 673
BstMWI GCNNNNNNNGC 2 cut(s) 404, 490
BstPI GGTNACC 1 cut(s) 291
BstSFI CTRYAG 2 cut(s) 139, 399
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 49, 290, 407, 471
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 194, 638
BtsCI GGATG 2 cut(s) 279, 345
BtsIMutI CAGTG 2 cut(s) 260, 661
Cac8I GCNNGC 1 cut(s) 443
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 147, 233
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 252
CspAI ACCGGT 2 cut(s) 147, 233
CviAII CATG 2 cut(s) 196, 539
DdeI CTNAG 4 cut(s) 41, 57, 108, 299
DpnI GATC 2 cut(s) 187, 675
DpnII GATC 2 cut(s) 185, 673
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 87, 306
EarI CTCTTC 2 cut(s) 87, 306
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 67
Eco91I GGTNACC 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 2 cut(s) 199, 542
FatI CATG 2 cut(s) 195, 538
Fnu4HI GCNGC 4 cut(s) 38, 279, 396, 485
FokI GGATG 2 cut(s) 286, 352
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 38, 279, 396, 485
FspBI CTAG 2 cut(s) 159, 176
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 38, 279, 396, 485
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 194, 638
HapII CCGG 2 cut(s) 148, 234
HgaI GACGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 199, 542
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 422, 447, 476
HpaII CCGG 2 cut(s) 148, 234
HphI GGTGA 2 cut(s) 248, 285
Hpy166II GTNNAC 2 cut(s) 260, 509
Hpy188I TCNGA 3 cut(s) 134, 225, 481
Hpy188III TCNNGA 4 cut(s) 32, 43, 533, 615
Hpy8I GTNNAC 2 cut(s) 260, 509
HpyAV CCTTC 2 cut(s) 552, 628
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 98, 433
HpyCH4V TGCA 3 cut(s) 260, 326, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 490
HpyF3I CTNAG 4 cut(s) 41, 57, 108, 299
HpySE526I ACGT 2 cut(s) 98, 433
Hsp92II CATG 2 cut(s) 199, 542
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 185, 673
LmnI GCTCC 2 cut(s) 34, 481
Lsp1109I GCAGC 4 cut(s) 49, 290, 407, 471
MaeI CTAG 2 cut(s) 159, 176
MaeII ACGT 2 cut(s) 98, 433
MaeIII GTNAC 3 cut(s) 229, 291, 434
MalI GATC 2 cut(s) 187, 675
MboI GATC 2 cut(s) 185, 673
MboII GAAGA 5 cut(s) 74, 145, 180, 323, 386
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 4 cut(s) 69, 262, 495, 546
MluCI AATT 5 cut(s) 90, 103, 162, 408, 500
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 2 cut(s) 148, 234
MwoI GCNNNNNNNGC 2 cut(s) 404, 490
NdeII GATC 2 cut(s) 185, 673
NlaIII CATG 2 cut(s) 199, 542
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 291
NspV TTCGAA 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 422, 447
PflFI GACNNNGTC 1 cut(s) 246
PinAI ACCGGT 2 cut(s) 147, 233
PkrI GCNGC 4 cut(s) 39, 280, 397, 486
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 549
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 4 cut(s) 38, 279, 396, 485
Sau3AI GATC 2 cut(s) 185, 673
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 485
SduI GDGCHC 4 cut(s) 69, 262, 495, 546
SfcI CTRYAG 2 cut(s) 139, 399
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 5 cut(s) 90, 103, 162, 408, 500
SsiI CCGC 1 cut(s) 170
SspMI CTAG 2 cut(s) 159, 176
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 2 cut(s) 101, 436
TaqI TCGA 5 cut(s) 17, 63, 207, 417, 614
TasI AATT 5 cut(s) 90, 103, 162, 408, 500
TfiI GAWTC 2 cut(s) 422, 447
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 2 cut(s) 267, 661
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 4 cut(s) 37, 278, 395, 484
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 4 cut(s) 345, 405, 435, 562
TspGWI ACGGA 2 cut(s) 208, 352
TspRI CASTG 2 cut(s) 267, 661
Tth111I GACNNNGTC 1 cut(s) 246
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 2 cut(s) 159, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.