Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Reverse (-)

25650082 .. 25652694

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G270100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGGACAAACGTTCAAATGAGATTGTCCTTGAGCAGCTGAAGAATGGAATTGCTCAGTTCGAGCTCGTCTCCTCCCCCGTTCTCTCAATTTCATCTTCGAATTCTCAGGTGAACCCAACGGCGTTGTTCGGAGACTACAGCCACCGGTTCTTTGCTAGAATTGGACCGTCACTAAGCAGAGGATCATCGGCCACGAAAAAAGTTGAACGCTATTCGGTTCAGAAAGTTACTGGCGACGGACGTTGTCTATTTCGTGCACTGGTCAAAGGAATGGCCTTCAATAAAGGATTTTCTCTTAGCCCAAGGGAGGAGAAAAATGATGCAGACGAACTACGGATGGCTGTGAAAGAGATTATATGTGAAGATGAGGAAGAGCGTCCCAAGTATGAAGCGGCTCTGGTGGCAATTACTGTTGACGAATCCTTAAACCGTTACTGCCAGCGCATCACAAGACCTGATTTCTGGGGAGGAGAGTCGGAGCTGCTGGTGCTGTCAAAGTTGTGTGGGCAGCCAATCACTGTTTACATACCAGAGCATGAGCATACAAATGGTGGGAGGAGTTCTGGTTTCATTCCCATTGCAGAATACGGAACCGAGTTTGGTAAAGGTTCTAGAAACAGAAAACCCAGGAAGGTTGTAAGGCTCTTGTACAGTGGCAGCAACCACTATGATCTGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

229

Amino Acids

25.5

Weight (kDa)

8.61

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 395
AclI	AACGTT	1 cut(s)	13
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	18, 209, 283
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	3 cut(s)	40, 67, 484
AluI	AGCT	3 cut(s)	40, 67, 484
Alw21I	GWGCWC	2 cut(s)	69, 262
Alw26I	GTCTC	2 cut(s)	76, 129
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	192, 276
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	4 cut(s)	37, 484, 511, 660
ApoI	RAATTY	1 cut(s)	103
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	69, 262
BbvI	GCAGC	4 cut(s)	49, 471, 523, 672
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	76, 129
BfaI	CTAG	2 cut(s)	159, 615
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	5 cut(s)	38, 396, 485, 512, 661
BlsI	GCNGC	5 cut(s)	39, 397, 486, 513, 662
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	2 cut(s)	313, 456
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	305, 629
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	238, 267
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	305, 629
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	71, 122
BseNI	ACTGG	2 cut(s)	238, 267
BseRI	GAGGAG	4 cut(s)	64, 326, 486, 574
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	49, 471, 523, 672
BshFI	GGCC	2 cut(s)	194, 278
BshTI	ACCGGT	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	69, 262
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	76, 129
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	194, 278
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	69, 262
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	2 cut(s)	185, 673
BspACI	CCGC	2 cut(s)	5, 395
BspANI	GGCC	2 cut(s)	194, 278
BspCNI	CTCAG	2 cut(s)	70, 121
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	238, 267
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	305, 629
BssMI	GATC	2 cut(s)	185, 673
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	5 cut(s)	171, 415, 434, 523, 656
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	4 cut(s)	57, 108, 176, 299
BstF5I	GGATG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	2 cut(s)	188, 676
BstMAI	GTCTC	2 cut(s)	76, 129
BstMBI	GATC	2 cut(s)	185, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 490
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	4 cut(s)	49, 471, 523, 672
BsuRI	GGCC	2 cut(s)	194, 278
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	260, 519, 661
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	652
CspAI	ACCGGT	1 cut(s)	147
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	4 cut(s)	57, 108, 176, 299
DpnI	GATC	2 cut(s)	187, 675
DpnII	GATC	2 cut(s)	185, 673
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	542
FaiI	YATR	8 cut(s)	359, 361, 390, 530, 540, 546, 672, 685
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	1 cut(s)	538
Fnu4HI	GCNGC	5 cut(s)	38, 396, 485, 512, 661
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	5 cut(s)	38, 396, 485, 512, 661
FspBI	CTAG	2 cut(s)	159, 615
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	5 cut(s)	38, 396, 485, 512, 661
HaeIII	GGCC	2 cut(s)	194, 278
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	422, 476
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	4 cut(s)	115, 260, 418, 526
Hpy188I	TCNGA	3 cut(s)	134, 225, 481
Hpy188III	TCNNGA	1 cut(s)	615
Hpy8I	GTNNAC	4 cut(s)	115, 260, 418, 526
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	289, 628
HpyCH4III	ACNGT	5 cut(s)	171, 415, 434, 523, 656
HpyCH4IV	ACGT	2 cut(s)	13, 244
HpyCH4V	TGCA	3 cut(s)	260, 326, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 490
HpyF3I	CTNAG	4 cut(s)	57, 108, 176, 299
HpySE526I	ACGT	2 cut(s)	13, 244
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	185, 673
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	4 cut(s)	49, 471, 523, 672
LweI	GCATC	2 cut(s)	313, 456
MaeI	CTAG	2 cut(s)	159, 615
MaeII	ACGT	2 cut(s)	13, 244
MaeIII	GTNAC	3 cut(s)	171, 229, 434
MalI	GATC	2 cut(s)	187, 675
MboI	GATC	2 cut(s)	185, 673
MboII	GAAGA	4 cut(s)	55, 90, 377, 386
MhlI	GDGCHC	2 cut(s)	69, 262
MluCI	AATT	5 cut(s)	51, 90, 103, 162, 408
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	85, 176, 304, 364, 464, 552
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	404, 490
NdeII	GATC	2 cut(s)	185, 673
NlaIII	CATG	1 cut(s)	542
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	39, 397, 486, 513, 662
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	5 cut(s)	38, 396, 485, 512, 661
Sau3AI	GATC	2 cut(s)	185, 673
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	69, 262
SetI	ASST	9 cut(s)	16, 42, 69, 114, 247, 460, 486, 613, 639
SfaNI	GCATC	2 cut(s)	313, 456
SfcI	CTRYAG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	51, 90, 103, 162, 408
SsiI	CCGC	2 cut(s)	5, 395
SspMI	CTAG	2 cut(s)	159, 615
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	5 cut(s)	171, 415, 434, 523, 656
TaiI	ACGT	2 cut(s)	16, 247
TaqI	TCGA	2 cut(s)	63, 101
TasI	AATT	5 cut(s)	51, 90, 103, 162, 408
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	3 cut(s)	267, 526, 661
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	4 cut(s)	37, 484, 511, 660
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	84, 405, 562
TspGWI	ACGGA	3 cut(s)	255, 352, 606
TspRI	CASTG	3 cut(s)	267, 526, 661
Tth111I	GACNNNGTC	1 cut(s)	246
VneI	GTGCAC	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	614
XspI	CTAG	2 cut(s)	159, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.