AT2G38025

OTU-like cysteine protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005403
Physical Location & Seq
Reverse (-)
15914958 .. 15916807
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38025.1

Sequence Viewer

Length: 705 bp
ATGGAGCTCAAATCTTCTTCCAACAATAACATTCTAGAGCAGCTGAGAAATGGCTTCGCTAGATTCGAGCTTGTTTCTTCTCCTACTGCTTCTGTGTCAGATTCAATATCTTCCACTTCACTCCCTGCTTCATTCATAAGCACAACGAAGGGAAATAGTTATGTGTTCTTCGCCAGAATCAATTCCTCGATGAATCGGTCTCCTGCAGCGAAAAAGGTTGAGAAGTATGCTGTGGATAGAGTTAAAGGGGATGGGAGATGTCTGTTTCGAGCATTGGTGAAAGGAATGGCCTTTAATAAGGGTATTACTCTTAACCCCCAACGAGAGAGAGATGATGCAGATGAGTTACGAATGGCTGTGAAAGAGGTTATATGCAATGACCCCAAGGAAAGGGAGAAGTACAAAGAAGCTTTAGTGGCTATCACTGTGGATGAGTCTCTGAAACGCTTTTGCCAGCGGATTGGAAGACACGATTTCTGGGGAGGAGAGTCCGAGCTGCTAGTTCTCTCCAAGCTATGTAAACAGCCTATCATCGTCTACATACCTGAGCACGAGCATGGAAGAGGAGGAGGGTATGGGCCGGGTTTTATACCGATTCAAGAGTATGGAAGTGAATTTCGAGGAGGCTGGGGAAAGGGGAAGACAAACAAGAATGTTGTTAGGCTTCTTTACAGTGGTAGAAACCACTATGATTTGCTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

234

Amino Acids

26.27

Weight (kDa)

9.47

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 82 - 182 8.3e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 537
AciI CCGC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 614
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 105, 599
AluBI AGCT 6 cut(s) 7, 43, 70, 410, 496, 514
AluI AGCT 6 cut(s) 7, 43, 70, 410, 496, 514
Alw21I GWGCWC 2 cut(s) 9, 552
Alw26I GTCTC 2 cut(s) 204, 441
AoxI GGCC 2 cut(s) 288, 578
ApeKI GCWGC 3 cut(s) 40, 206, 496
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 289
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 2 cut(s) 472, 647
Bbv12I GWGCWC 2 cut(s) 9, 552
BbvI GCAGC 3 cut(s) 52, 218, 483
BccI CCATC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 204, 441
BfaI CTAG 3 cut(s) 35, 60, 500
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 41, 207, 497
BlsI GCNGC 3 cut(s) 42, 208, 498
Bme1390I CCNGG 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 578
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 472, 647
Bpu10I CCTNAGC 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 256, 436
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 35, 537
BseRI GAGGAG 4 cut(s) 498, 579, 582, 636
BseXI GCAGC 3 cut(s) 52, 218, 483
BseYI CCCAGC 1 cut(s) 627
BshFI GGCC 2 cut(s) 290, 580
BsiHKAI GWGCWC 2 cut(s) 9, 552
BsiSI CCGG 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 204, 441
BsnI GGCC 2 cut(s) 290, 580
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 9, 552
BspACI CCGC 1 cut(s) 457
BspANI GGCC 2 cut(s) 290, 580
BspCNI CTCAG 2 cut(s) 36, 538
BspMAI CTGCAG 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 384
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 2 cut(s) 427, 674
Bst6I CTCTTC 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 44, 546
BstF5I GGATG 2 cut(s) 256, 436
BstMAI GTCTC 2 cut(s) 204, 441
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 52, 218, 483
BstV2I GAAGAC 2 cut(s) 472, 647
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 2 cut(s) 290, 580
BtsCI GGATG 2 cut(s) 256, 436
BtsIMutI CAGTG 2 cut(s) 423, 679
Cac8I GCNNGC 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 400
CviAII CATG 1 cut(s) 557
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 44, 546
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 560
FatI CATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 3 cut(s) 41, 207, 497
FokI GGATG 2 cut(s) 263, 443
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 41, 207, 497
FspBI CTAG 3 cut(s) 35, 60, 500
GluI GCNGC 3 cut(s) 41, 207, 497
GsaI CCCAGC 1 cut(s) 631
HaeIII GGCC 2 cut(s) 290, 580
HapII CCGG 1 cut(s) 581
Hin1II CATG 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 7 cut(s) 63, 101, 177, 193, 434, 488, 595
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 521, 538
Hpy188I TCNGA 3 cut(s) 100, 441, 493
Hpy188III TCNNGA 2 cut(s) 35, 599
Hpy8I GTNNAC 2 cut(s) 521, 538
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 427, 674
HpyCH4V TGCA 3 cut(s) 206, 338, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 44, 546
Hsp92II CATG 1 cut(s) 560
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 138, 187, 216, 463, 467, 558, 594, 613
Lsp1109I GCAGC 3 cut(s) 52, 218, 483
LweI GCATC 1 cut(s) 325
MaeI CTAG 3 cut(s) 35, 60, 500
MaeIII GTNAC 1 cut(s) 345
MboII GAAGA 8 cut(s) 6, 9, 69, 102, 160, 477, 573, 652
MhlI GDGCHC 2 cut(s) 9, 552
MluCI AATT 2 cut(s) 181, 614
MlyI GAGTC 2 cut(s) 443, 497
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 8 cut(s) 196, 358, 476, 557, 560, 563, 614, 617
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 3 cut(s) 243, 294, 312
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 43, 457
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 582
NlaIII CATG 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 181
PfeI GAWTC 5 cut(s) 63, 101, 177, 193, 595
PkrI GCNGC 3 cut(s) 42, 208, 498
PleI GAGTC 2 cut(s) 442, 496
PpsI GAGTC 2 cut(s) 442, 496
Psp124BI GAGCTC 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 243, 294, 312
SatI GCNGC 3 cut(s) 41, 207, 497
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 443, 497
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 2 cut(s) 9, 552
SetI ASST 9 cut(s) 9, 45, 72, 219, 369, 412, 498, 516, 547
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 555
Sse9I AATT 2 cut(s) 181, 614
SsiI CCGC 1 cut(s) 457
SspMI CTAG 3 cut(s) 35, 60, 500
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 427, 674
TaqI TCGA 4 cut(s) 66, 188, 268, 619
TaqII GACCGA 1 cut(s) 186
TasI AATT 2 cut(s) 181, 614
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 5 cut(s) 63, 101, 177, 193, 595
Tru1I TTAA 3 cut(s) 243, 294, 312
Tru9I TTAA 3 cut(s) 243, 294, 312
TscAI CASTG 2 cut(s) 430, 679
TseI GCWGC 3 cut(s) 40, 206, 496
TspDTI ATGAA 3 cut(s) 120, 124, 206
TspRI CASTG 2 cut(s) 430, 679
XapI RAATTY 1 cut(s) 614
XbaI TCTAGA 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 3 cut(s) 35, 60, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.