Rw3G010680

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005403
Physical Location & Seq
Forward (+)
10322766 .. 10325593
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010680.1

Sequence Viewer

Length: 492 bp
ATGAGGAAAGTCGAACGCTATTCCGTTCAGAGAGTTACCGGTGATGGACGCTGTCTATTTCGTGCACTGGTAAAAGGGATGGCAGCAAATAAAGGGTCACCTCTCAGCCCAAGGGAAGAGAGAGACAATGCAGATGAGCTACGGACGGCTGTGAAAGAGGTTATATGCAAAAATGAGGAAGAACGCCCCCAGTATGAAGCAGCTATAGTGGCAATTACTGTCGATGAATCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGAGGAGAGTCGGAGCTGCTGGTGCTCTCAAAATTGTGTAGACAGCCAATCATAGTCTATATTCCAGAGCATGAGCACACAAATGGTGGAAGGGGTTCTGGTTTCATTCCCATTGCAGAATATGGAAGCGAGTTTAGTAAAGGTTCGAGAAACAGAAAGCCGAGGAAGGCCGTGAGGCTCTTGTTCAGTGGCAGGAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

9.39

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 14 - 122 2.5e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AclI AACGTT 1 cut(s) 238
AgeI ACCGGT 1 cut(s) 38
AluBI AGCT 3 cut(s) 139, 203, 289
AluI AGCT 3 cut(s) 139, 203, 289
Alw21I GWGCWC 3 cut(s) 67, 300, 351
Alw26I GTCTC 1 cut(s) 117
Alw44I GTGCAC 1 cut(s) 63
AoxI GGCC 1 cut(s) 441
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 83, 200, 289
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AsiGI ACCGGT 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 53, 90
BaeGI GKGCMC 1 cut(s) 67
Bbv12I GWGCWC 3 cut(s) 67, 300, 351
BbvI GCAGC 3 cut(s) 95, 212, 276
BccI CCATC 2 cut(s) 38, 73
BceAI ACGGC 2 cut(s) 162, 428
BcoDI GTCTC 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 84, 201, 290
BlsI GCNGC 3 cut(s) 85, 202, 291
BmiI GGNNCC 1 cut(s) 470
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 110, 434
BsaWI WCCGGW 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 72, 190
Bse3DI GCAATG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 110, 434
BseGI GGATG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 72, 190
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 3 cut(s) 95, 212, 276
BshFI GGCC 1 cut(s) 443
BshTI ACCGGT 1 cut(s) 38
BsiHKAI GWGCWC 3 cut(s) 67, 300, 351
BsiSI CCGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 67, 300, 351
Bsp143I GATC 1 cut(s) 478
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 72, 190
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 110, 434
BssMI GATC 1 cut(s) 478
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 2 cut(s) 209, 295
BstPI GGTNACC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 95, 212, 276
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 65, 466
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 38
CseI GACGC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 38
CviAII CATG 1 cut(s) 344
CviJI RGCY 9 cut(s) 108, 139, 149, 203, 289, 319, 433, 443, 451
CviKI_1 RGCY 9 cut(s) 108, 139, 149, 203, 289, 319, 433, 443, 451
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 347
FatI CATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 84, 201, 290
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 3 cut(s) 84, 201, 290
GluI GCNGC 3 cut(s) 84, 201, 290
HaeIII GGCC 1 cut(s) 443
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 347
HinfI GANTC 3 cut(s) 227, 252, 281
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 53, 90
Hpy166II GTNNAC 2 cut(s) 65, 314
Hpy188I TCNGA 2 cut(s) 30, 286
Hpy188III TCNNGA 2 cut(s) 338, 420
Hpy8I GTNNAC 2 cut(s) 65, 314
HpyAV CCTTC 2 cut(s) 357, 433
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 65, 131, 168, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 295
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 347
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 95, 212, 276
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 3 cut(s) 34, 96, 239
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 2 cut(s) 128, 191
MhlI GDGCHC 3 cut(s) 67, 300, 351
MluCI AATT 2 cut(s) 213, 305
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 6 cut(s) 111, 151, 169, 269, 429, 441
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 209, 295
NdeII GATC 1 cut(s) 478
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 470
NmeAIII GCCGAG 1 cut(s) 459
NmuCI GTSAC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 227, 252
PflFI GACNNNGTC 1 cut(s) 51
PinAI ACCGGT 1 cut(s) 38
PkrI GCNGC 3 cut(s) 85, 202, 291
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp1406I AACGTT 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 470
PsyI GACNNNGTC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 3 cut(s) 84, 201, 290
Sau3AI GATC 1 cut(s) 478
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 3 cut(s) 67, 300, 351
SetI ASST 8 cut(s) 103, 141, 162, 205, 241, 265, 291, 418
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse9I AATT 2 cut(s) 213, 305
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 241
TaqI TCGA 3 cut(s) 12, 222, 419
TasI AATT 2 cut(s) 213, 305
TfiI GAWTC 2 cut(s) 227, 252
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 72, 466
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 3 cut(s) 83, 200, 289
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 210, 240, 367
TspGWI ACGGA 2 cut(s) 13, 157
TspRI CASTG 2 cut(s) 72, 466
Tth111I GACNNNGTC 1 cut(s) 51
VneI GTGCAC 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.