Rroxscaffold_6G00416110

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005403
Physical Location & Seq
Reverse (-)
38168829 .. 38173376
4548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416110.1

Sequence Viewer

Length: 771 bp
ATGGCGCACGAGCTTTCAAACGGTACTCAACTCATCTCCAATTCCATCTCCATCTCTCTCATTTCATTGATTCTATTTATCTTCACATTTTCGTGTTATGGAGCAGAGGCTGTTCTGGATCAGCTCAGGAATGGATTTGCTCAGTTCGAGCTCGTCTCCTCCCCTCTTCTCTCAATTTCAACGTCCAATTCTCAGGCAAATGCCACGCCGTTTCTCGGAGACTACAGCCACCGGTTCTTCGCTAGAATTGGACCGCCACTAGGCAGAGGATCTTCGGCCATGAGGAAAGTCGAACGCTATTCCGTTCAGAGAGTTACCGGTGATGGACGCTGTCTATTTCGTGCACTGGTAAAAGGGATGGCAGCAAATAAAGGGTCACCTCTTAGCCCAAGGGAAGAGAGAGACAATGCAGATGAACTACGGATGGCTGTGAAAGAGGTTATATGCGAAAATGAGGAAGAACGCCCCCAGTATGAAGCAGCTATAGTGGCAATTACTGTTGATGAATCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGAGGAGAGTCGGAACTGCTGGTGCTCTCAAAATTATGTAGACAGCCAATCATCGTCTATATTCCAGAGCATGAGCACACAAATGGTGGAAGGGGTTCGGGTTTCATTCCCATTGCAGAATATGGAAGCGAGTTTAGTAAAGGTTCGAGAAACAGAAAGCCGAGGAAGGCCGTGAGGCTCTTGTTCAGTGGCAGGAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

256

Amino Acids

28.59

Weight (kDa)

8.81

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 107 - 214 2.1e-12 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 592
AciI CCGC 1 cut(s) 254
AclI AACGTT 1 cut(s) 517
AclWI GGATC 2 cut(s) 126, 277
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 215, 260
AgeI ACCGGT 2 cut(s) 231, 317
AgsI TTSAA 2 cut(s) 18, 180
AluBI AGCT 4 cut(s) 13, 124, 151, 482
AluI AGCT 4 cut(s) 13, 124, 151, 482
Alw21I GWGCWC 4 cut(s) 153, 346, 579, 630
Alw26I GTCTC 3 cut(s) 160, 213, 396
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 126, 277
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 276, 720
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 362, 479
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AsiGI ACCGGT 2 cut(s) 231, 317
Asp700I GAANNNNTTC 1 cut(s) 646
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 332, 369
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 8
Bbv12I GWGCWC 4 cut(s) 153, 346, 579, 630
BbvI GCAGC 2 cut(s) 374, 491
BccI CCATC 5 cut(s) 53, 59, 317, 352, 418
BceAI ACGGC 2 cut(s) 193, 707
BcoDI GTCTC 3 cut(s) 160, 213, 396
BfaI CTAG 2 cut(s) 243, 260
BfmI CTRYAG 2 cut(s) 223, 483
BisI GCNGC 2 cut(s) 363, 480
BlsI GCNGC 2 cut(s) 364, 481
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 749
BmrI ACTGGG 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 140, 172
Bpu10I CCTNAGC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 389, 713
BsaWI WCCGGW 2 cut(s) 231, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 260
Bse118I RCCGGY 2 cut(s) 231, 317
Bse1I ACTGG 2 cut(s) 351, 469
Bse3DI GCAATG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 389, 713
BseGI GGATG 2 cut(s) 363, 429
BseLI CCNNNNNNNGG 2 cut(s) 215, 260
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 3 cut(s) 139, 155, 206
BseNI ACTGG 2 cut(s) 351, 469
BseRI GAGGAG 2 cut(s) 148, 570
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 2 cut(s) 374, 491
BshFI GGCC 2 cut(s) 278, 722
BshTI ACCGGT 2 cut(s) 231, 317
BsiHKAI GWGCWC 4 cut(s) 153, 346, 579, 630
BsiSI CCGG 2 cut(s) 232, 318
BslI CCNNNNNNNGG 2 cut(s) 215, 260
BsmAI GTCTC 3 cut(s) 160, 213, 396
BsmBI CGTCTC 1 cut(s) 160
BsnI GGCC 2 cut(s) 278, 722
Bsp1286I GDGCHC 4 cut(s) 153, 346, 579, 630
Bsp143I GATC 3 cut(s) 118, 269, 757
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 278, 722
BspCNI CTCAG 3 cut(s) 138, 154, 205
BspLI GGNNCC 1 cut(s) 749
BspPI GGATC 2 cut(s) 126, 277
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 2 cut(s) 231, 317
BsrI ACTGG 2 cut(s) 351, 469
BssAI RCCGGY 2 cut(s) 231, 317
BssECI CCNNGG 2 cut(s) 389, 713
BssMI GATC 3 cut(s) 118, 269, 757
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 23, 499
Bst6I CTCTTC 2 cut(s) 171, 390
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 4 cut(s) 125, 141, 192, 383
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 2 cut(s) 363, 429
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 121, 272, 760
BstMAI GTCTC 3 cut(s) 160, 213, 396
BstMBI GATC 3 cut(s) 118, 269, 757
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 223, 483
BstSLI GKGCMC 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 374, 491
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 278, 722
BtsCI GGATG 2 cut(s) 363, 429
BtsIMutI CAGTG 2 cut(s) 344, 745
Cac8I GCNNGC 1 cut(s) 527
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 231, 317
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 24
CspAI ACCGGT 2 cut(s) 231, 317
CviAII CATG 2 cut(s) 280, 623
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 4 cut(s) 125, 141, 192, 383
DpnI GATC 3 cut(s) 120, 271, 759
DpnII GATC 3 cut(s) 118, 269, 757
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 171, 390
EarI CTCTTC 2 cut(s) 171, 390
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 389
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 283, 626
FatI CATG 2 cut(s) 279, 622
FblI GTMKAC 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 363, 480
FokI GGATG 2 cut(s) 370, 436
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 363, 480
FspBI CTAG 2 cut(s) 243, 260
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 363, 480
HaeIII GGCC 2 cut(s) 278, 722
HapII CCGG 2 cut(s) 232, 318
HgaI GACGC 1 cut(s) 336
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 283, 626
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 70, 506, 531, 560
HpaII CCGG 2 cut(s) 232, 318
HphI GGTGA 2 cut(s) 332, 369
Hpy166II GTNNAC 2 cut(s) 344, 593
Hpy188I TCNGA 3 cut(s) 218, 309, 565
Hpy188III TCNNGA 4 cut(s) 116, 127, 617, 699
Hpy8I GTNNAC 2 cut(s) 344, 593
HpyAV CCTTC 2 cut(s) 636, 712
HpyCH4III ACNGT 2 cut(s) 23, 499
HpyCH4IV ACGT 2 cut(s) 182, 517
HpyCH4V TGCA 3 cut(s) 344, 410, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 125, 141, 192, 383
HpySE526I ACGT 2 cut(s) 182, 517
Hsp92II CATG 2 cut(s) 283, 626
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 118, 269, 757
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 2 cut(s) 374, 491
MaeI CTAG 2 cut(s) 243, 260
MaeII ACGT 2 cut(s) 182, 517
MaeIII GTNAC 3 cut(s) 313, 375, 518
MalI GATC 3 cut(s) 120, 271, 759
MboI GATC 3 cut(s) 118, 269, 757
MboII GAAGA 6 cut(s) 73, 158, 229, 264, 407, 470
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 4 cut(s) 153, 346, 579, 630
MluCI AATT 6 cut(s) 40, 174, 187, 246, 492, 584
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 543
MroXI GAANNNNTTC 1 cut(s) 646
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 91, 633
MspI CCGG 2 cut(s) 232, 318
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 3 cut(s) 118, 269, 757
NlaIII CATG 2 cut(s) 283, 626
NlaIV GGNNCC 1 cut(s) 749
NmeAIII GCCGAG 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 3 cut(s) 70, 506, 531
PflFI GACNNNGTC 1 cut(s) 330
PinAI ACCGGT 2 cut(s) 231, 317
PkrI GCNGC 2 cut(s) 364, 481
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 749
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 330
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 91, 633
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 2 cut(s) 363, 480
Sau3AI GATC 3 cut(s) 118, 269, 757
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 4 cut(s) 153, 346, 579, 630
SfcI CTRYAG 2 cut(s) 223, 483
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 91, 633
Sse9I AATT 6 cut(s) 40, 174, 187, 246, 492, 584
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 243, 260
SstI GAGCTC 1 cut(s) 153
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 2 cut(s) 23, 499
TaiI ACGT 2 cut(s) 185, 520
TaqI TCGA 3 cut(s) 147, 291, 698
TasI AATT 6 cut(s) 40, 174, 187, 246, 492, 584
TfiI GAWTC 3 cut(s) 70, 506, 531
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 2 cut(s) 351, 745
TseFI GTSAC 1 cut(s) 375
TseI GCWGC 2 cut(s) 362, 479
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 5 cut(s) 54, 429, 489, 519, 646
TspGWI ACGGA 2 cut(s) 292, 436
TspRI CASTG 2 cut(s) 351, 745
Tth111I GACNNNGTC 1 cut(s) 330
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 2 cut(s) 243, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.