FvH4_6g12160

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005403
Physical Location & Seq
Forward (+)
7350121 .. 7353212
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12160.t1

Sequence Viewer

Length: 684 bp
ATGGCGCCTAAGTTTTCAAATGAGGTTGTTCTTGAGCAGCTGAAGCATGGATTTGCTCATTTTGAAATCGTCTCCTCCCCCGTTCTCTCTATTTCAACTTCCATTTATTCTCCGGCGAAACCCGTGGTGTTCTTCGGAGACTATAGTCGTCACCGCTTCTTTGCTAAAACTGAACCCCTGCTAGGCAGAGGATCTCCTGCGGCCATAAGGGAAGCTGAAACCTATACGGTTCAGAGAGTTGCTCCCGATGGACAATGTCTGTTTCGTGCAGTGGTAAAAGGAATGGCAGCAAATGATGGGTCTACTCTTTCCCAAAGGGAAGAGAAAAAACGTTTAGAGGAGCTACGGAGGGCTGTGAAAGATTTCACATGTAGTGAGTATGAGAAACAACATCCCCAGTATGAAGCAGTCCGGAAGGCAATTGTTGGAAAGTTCGACCGTTACTGCGAGCGTATCACAAAACCTAATTTCTGGGGAGGAAAGTCGGAGCTGCTGGCGCTGTCGCAGGTGTATAAGCTCCCAATCATTGTGTATATACCAGCGCCCAAGCACCCAAATGGTGGAGGGGGTTCTGGTTTCATTCCTTTTCAAAAATATGGAACTGAGTTTGGTGAAGCTTGGGGAGGCAGAAAGACTGTGAGGCTCTTGTTAAGTGGCAGCAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

228

Amino Acids

25.43

Weight (kDa)

9.43

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 82 - 178 1e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 560
AccI GTMKAC 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 2 cut(s) 154, 200
AclI AACGTT 1 cut(s) 331
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 182, 560
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 18, 65, 96, 590
AluBI AGCT 6 cut(s) 40, 215, 343, 490, 517, 617
AluI AGCT 6 cut(s) 40, 215, 343, 490, 517, 617
Alw26I GTCTC 2 cut(s) 76, 132
AlwI GGATC 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 37, 287, 490, 657
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 3 cut(s) 7, 499, 544
AsuHPI GGTGA 2 cut(s) 143, 623
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 49, 299, 477, 669
BccI CCATC 2 cut(s) 242, 290
BcoDI GTCTC 2 cut(s) 76, 132
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 3 cut(s) 8, 500, 545
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 5 cut(s) 38, 201, 288, 491, 658
BlsI GCNGC 5 cut(s) 39, 202, 289, 492, 659
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 391
BoxI GACNNNNGTC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 560
Bse1I ACTGG 1 cut(s) 397
BseAI TCCGGA 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 182, 560
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 2 cut(s) 64, 353
BseXI GCAGC 4 cut(s) 49, 299, 477, 669
BsgI GTGCAG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 439
BsiSI CCGG 2 cut(s) 113, 412
BslI CCNNNNNNNGG 2 cut(s) 182, 560
BsmAI GTCTC 2 cut(s) 76, 132
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 2 cut(s) 191, 670
BspACI CCGC 2 cut(s) 154, 200
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 191, 670
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 229, 440, 637
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 449, 495
BstDEI CTNAG 2 cut(s) 9, 603
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 3 cut(s) 8, 500, 545
BstHHI GCGC 3 cut(s) 7, 499, 544
BstKTI GATC 2 cut(s) 194, 673
BstMAI GTCTC 2 cut(s) 76, 132
BstMBI GATC 2 cut(s) 191, 670
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 43, 496
BstNSI RCATGY 1 cut(s) 372
BstPAI GACNNNNGTC 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 49, 299, 477, 669
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 449, 495
CfoI GCGC 3 cut(s) 7, 499, 544
CviAII CATG 2 cut(s) 47, 369
CviJI RGCY 9 cut(s) 40, 203, 215, 343, 353, 490, 517, 617, 643
CviKI_1 RGCY 9 cut(s) 40, 203, 215, 343, 353, 490, 517, 617, 643
DdeI CTNAG 2 cut(s) 9, 603
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 193, 672
DpnII GATC 2 cut(s) 191, 670
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 2 cut(s) 50, 372
FatI CATG 2 cut(s) 46, 368
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 5 cut(s) 38, 201, 288, 491, 658
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 5 cut(s) 38, 201, 288, 491, 658
FspBI CTAG 1 cut(s) 182
GlaI GCGC 3 cut(s) 6, 498, 543
GluI GCNGC 5 cut(s) 38, 201, 288, 491, 658
HaeII RGCGCY 3 cut(s) 8, 500, 545
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 113, 412
HhaI GCGC 3 cut(s) 7, 499, 544
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 50, 372
Hin6I GCGC 3 cut(s) 5, 497, 542
HinP1I GCGC 3 cut(s) 5, 497, 542
HindIII AAGCTT 1 cut(s) 615
HpaII CCGG 2 cut(s) 113, 412
HphI GGTGA 2 cut(s) 143, 623
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 137, 234, 487
Hpy188III TCNNGA 3 cut(s) 32, 245, 412
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 3 cut(s) 229, 440, 637
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 496
HpyF3I CTNAG 2 cut(s) 9, 603
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 50, 372
HspAI GCGC 3 cut(s) 5, 497, 542
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 411
Kzo9I GATC 2 cut(s) 191, 670
LmnI GCTCC 4 cut(s) 247, 340, 487, 522
Lsp1109I GCAGC 4 cut(s) 49, 299, 477, 669
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 149, 440
MalI GATC 2 cut(s) 193, 672
MboI GATC 2 cut(s) 191, 670
MboII GAAGA 2 cut(s) 124, 332
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 191
MluCI AATT 2 cut(s) 420, 466
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 406, 465
MnlI CCTC 9 cut(s) 16, 85, 182, 331, 342, 470, 557, 617, 633
MroI TCCGGA 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 113, 412
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 43, 496
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 191, 670
NlaIII CATG 2 cut(s) 50, 372
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 149
NspI RCATGY 1 cut(s) 372
PaqCI CACCTGC 1 cut(s) 496
PciI ACATGT 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 362
PflFI GACNNNGTC 1 cut(s) 255
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 5 cut(s) 39, 202, 289, 492, 659
PluTI GGCGCC 1 cut(s) 8
PscI ACATGT 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 5 cut(s) 38, 201, 288, 491, 658
Sau3AI GATC 2 cut(s) 191, 670
SfcI CTRYAG 1 cut(s) 142
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 420, 466
SsiI CCGC 2 cut(s) 154, 200
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 229, 440, 637
TaiI ACGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 435
TasI AATT 2 cut(s) 420, 466
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 4 cut(s) 37, 287, 490, 657
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 417, 568
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 560
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.