Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Forward (+)

21407 .. 25086

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006492.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggcgcacaagctttcaaacgaggctgttctggagcagctcaggaatggatttgctcagttcgagctcgtctcctcccctcttctctcaatttcaacgtccaattctcaggcaaacgccacgccgtttctcggagactacagccaccggttcttcgctagaattggaccgccactaggcagaggatcttcggccatgaggaaagtcgaacgctattccgttcagagagttaccggtgatggacgctgtctatttcgtgcactggtaaaagggatggcagcaaataaagggtcacctcttagcccaagggaagagagagacactgcagatgagctacggatggctgtgaaagaggttatatgcgaaaatgaggaagaacgcccccagtatgaagcagctatagtggcaattactgtcgatgaatccttaaaacgttactgccagcgaatccaaagacctgatttctggggaggagagtcggagctgctggtgctctcaaaattgtgtagacagccaatcatagtctatattccagagcatgagcacacaaatggtggaaggggttctggtttcattcccattgcagaatatggaagcgagtttagtaaaggagacgacgtcgttcctgctgcacaatgtactcatttgagcttttctgcttcagtagtcactccggcgccgtcagaggctgttcttgagcagcttaagaatggatttgctcagtttgagctcgtctcctaccccgttctctctatttcaacttccatttctcaggcgaacattccggcatctctcggacactatagccaccggttctttgccagaactggactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

278

Amino Acids

30.58

Weight (kDa)

6.4

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	621
AccB1I	GGYRCC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	1 cut(s)	170
AclI	AACGTT	1 cut(s)	433
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	2 cut(s)	618, 677
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	2 cut(s)	131, 176
AflII	CTTAAG	1 cut(s)	704
AgeI	ACCGGT	3 cut(s)	147, 233, 810
AgsI	TTSAA	3 cut(s)	18, 96, 759
AluBI	AGCT	9 cut(s)	13, 40, 67, 334, 398, 484, 651, 703, 730
AluI	AGCT	9 cut(s)	13, 40, 67, 334, 398, 484, 651, 703, 730
Alw21I	GWGCWC	5 cut(s)	69, 262, 495, 546, 732
Alw26I	GTCTC	5 cut(s)	76, 129, 312, 606, 739
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	6 cut(s)	37, 278, 395, 484, 629, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AsiGI	ACCGGT	3 cut(s)	147, 233, 810
Asp700I	GAANNNNTTC	1 cut(s)	562
AspLEI	GCGC	2 cut(s)	7, 679
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	248, 285
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	676
BanII	GRGCYC	2 cut(s)	69, 732
Bbv12I	GWGCWC	5 cut(s)	69, 262, 495, 546, 732
BbvI	GCAGC	6 cut(s)	49, 290, 407, 471, 616, 712
BccI	CCATC	3 cut(s)	233, 268, 334
BceAI	ACGGC	2 cut(s)	109, 664
BcoDI	GTCTC	5 cut(s)	76, 129, 312, 606, 739
BfaI	CTAG	2 cut(s)	159, 176
BfmI	CTRYAG	4 cut(s)	139, 324, 399, 802
BfoI	RGCGCY	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	6 cut(s)	38, 279, 396, 485, 630, 701
BlsI	GCNGC	6 cut(s)	39, 280, 397, 486, 631, 702
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	678
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	379
BplI	GAGNNNNNCTC	4 cut(s)	56, 88, 719, 751
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	716
BsaHI	GRCGYC	2 cut(s)	618, 677
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	3 cut(s)	147, 233, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 176
Bse118I	RCCGGY	3 cut(s)	147, 233, 810
Bse1I	ACTGG	3 cut(s)	267, 385, 832
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	279, 345
BseLI	CCNNNNNNNGG	2 cut(s)	131, 176
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	5 cut(s)	55, 71, 122, 734, 785
BseNI	ACTGG	3 cut(s)	267, 385, 832
BseRI	GAGGAG	2 cut(s)	64, 486
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	6 cut(s)	49, 290, 407, 471, 616, 712
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	676
BshTI	ACCGGT	3 cut(s)	147, 233, 810
BsiHKAI	GWGCWC	5 cut(s)	69, 262, 495, 546, 732
BsiSI	CCGG	5 cut(s)	148, 234, 674, 785, 811
BslI	CCNNNNNNNGG	2 cut(s)	131, 176
BsmAI	GTCTC	5 cut(s)	76, 129, 312, 606, 739
BsmBI	CGTCTC	3 cut(s)	76, 606, 739
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	69, 262, 495, 546, 732
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	5 cut(s)	54, 70, 121, 733, 784
BspLI	GGNNCC	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	676
BspTI	CTTAAG	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	3 cut(s)	147, 233, 810
BsrI	ACTGG	3 cut(s)	267, 385, 832
BssAI	RCCGGY	3 cut(s)	147, 233, 810
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	185
BssNI	GRCGYC	2 cut(s)	618, 677
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	415, 834
Bst6I	CTCTTC	2 cut(s)	87, 306
BstACI	GRCGYC	2 cut(s)	618, 677
BstAFI	CTTAAG	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	6 cut(s)	41, 57, 108, 299, 720, 771
BstEII	GGTNACC	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	279, 345
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	7, 679
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	5 cut(s)	76, 129, 312, 606, 739
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 490
BstPI	GGTNACC	1 cut(s)	291
BstSFI	CTRYAG	4 cut(s)	139, 324, 399, 802
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	6 cut(s)	49, 290, 407, 471, 616, 712
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	279, 345
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	260, 321
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	2 cut(s)	7, 679
Cfr10I	RCCGGY	3 cut(s)	147, 233, 810
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	639
CspAI	ACCGGT	3 cut(s)	147, 233, 810
CviAII	CATG	2 cut(s)	196, 539
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	6 cut(s)	41, 57, 108, 299, 720, 771
DinI	GGCGCC	1 cut(s)	678
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	87, 306
EarI	CTCTTC	2 cut(s)	87, 306
Ecl136II	GAGCTC	2 cut(s)	67, 730
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	69, 732
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	2 cut(s)	67, 730
Eco57I	CTGAAG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	291
EcoICRI	GAGCTC	2 cut(s)	67, 730
EcoO65I	GGTNACC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	2 cut(s)	69, 732
EgeI	GGCGCC	1 cut(s)	678
EheI	GGCGCC	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	3 cut(s)	76, 606, 739
FaeI	CATG	2 cut(s)	199, 542
FatI	CATG	2 cut(s)	195, 538
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	6 cut(s)	38, 279, 396, 485, 630, 701
FokI	GGATG	2 cut(s)	286, 352
FriOI	GRGCYC	2 cut(s)	69, 732
Fsp4HI	GCNGC	6 cut(s)	38, 279, 396, 485, 630, 701
FspBI	CTAG	2 cut(s)	159, 176
GlaI	GCGC	2 cut(s)	6, 678
GluI	GCNGC	6 cut(s)	38, 279, 396, 485, 630, 701
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	5 cut(s)	148, 234, 674, 785, 811
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	2 cut(s)	7, 679
Hin1I	GRCGYC	2 cut(s)	618, 677
Hin1II	CATG	2 cut(s)	199, 542
Hin6I	GCGC	2 cut(s)	5, 677
HinP1I	GCGC	2 cut(s)	5, 677
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	422, 447, 476
HpaII	CCGG	5 cut(s)	148, 234, 674, 785, 811
HphI	GGTGA	2 cut(s)	248, 285
Hpy166II	GTNNAC	2 cut(s)	260, 509
Hpy188I	TCNGA	5 cut(s)	134, 225, 481, 685, 797
Hpy188III	TCNNGA	4 cut(s)	32, 43, 533, 695
Hpy8I	GTNNAC	2 cut(s)	260, 509
Hpy99I	CGWCG	2 cut(s)	620, 623
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	2 cut(s)	415, 834
HpyCH4IV	ACGT	3 cut(s)	98, 433, 618
HpyCH4V	TGCA	4 cut(s)	260, 326, 584, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 490
HpyF3I	CTNAG	6 cut(s)	41, 57, 108, 299, 720, 771
HpySE526I	ACGT	3 cut(s)	98, 433, 618
Hsp92I	GRCGYC	2 cut(s)	618, 677
Hsp92II	CATG	2 cut(s)	199, 542
HspAI	GCGC	2 cut(s)	5, 677
KasI	GGCGCC	1 cut(s)	676
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	34, 481
Lsp1109I	GCAGC	6 cut(s)	49, 290, 407, 471, 616, 712
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	2 cut(s)	159, 176
MaeII	ACGT	3 cut(s)	98, 433, 618
MaeIII	GTNAC	4 cut(s)	229, 291, 434, 667
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	74, 145, 180, 323, 386
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	5 cut(s)	69, 262, 495, 546, 732
MluCI	AATT	5 cut(s)	90, 103, 162, 408, 500
Mly113I	GGCGCC	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	2 cut(s)	428, 705
MslI	CAYNNNNRTG	1 cut(s)	549
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	5 cut(s)	148, 234, 674, 785, 811
MwoI	GCNNNNNNNGC	2 cut(s)	404, 490
NarI	GGCGCC	1 cut(s)	677
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	199, 542
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	2 cut(s)	291, 667
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	422, 447
PflFI	GACNNNGTC	2 cut(s)	246, 617
PinAI	ACCGGT	3 cut(s)	147, 233, 810
PkrI	GCNGC	6 cut(s)	39, 280, 397, 486, 631, 702
PleI	GAGTC	1 cut(s)	484
PluTI	GGCGCC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	2 cut(s)	69, 732
Psp1406I	AACGTT	1 cut(s)	433
PspEI	GGTNACC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	2 cut(s)	246, 617
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	2 cut(s)	69, 732
SaqAI	TTAA	2 cut(s)	428, 705
SatI	GCNGC	6 cut(s)	38, 279, 396, 485, 630, 701
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	485
SduI	GDGCHC	5 cut(s)	69, 262, 495, 546, 732
SfaNI	GCATC	1 cut(s)	797
SfcI	CTRYAG	4 cut(s)	139, 324, 399, 802
SfoI	GGCGCC	1 cut(s)	678
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	695, 704
SmoI	CTYRAG	2 cut(s)	695, 704
Sse9I	AATT	5 cut(s)	90, 103, 162, 408, 500
SsiI	CCGC	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	676
SspMI	CTAG	2 cut(s)	159, 176
SstI	GAGCTC	2 cut(s)	69, 732
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	415, 834
TaiI	ACGT	3 cut(s)	101, 436, 621
TaqI	TCGA	3 cut(s)	63, 207, 417
TasI	AATT	5 cut(s)	90, 103, 162, 408, 500
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	2 cut(s)	422, 447
Tru1I	TTAA	2 cut(s)	428, 705
Tru9I	TTAA	2 cut(s)	428, 705
TscAI	CASTG	2 cut(s)	267, 328
TseFI	GTSAC	2 cut(s)	291, 667
TseI	GCWGC	6 cut(s)	37, 278, 395, 484, 629, 700
Tsp45I	GTSAC	2 cut(s)	291, 667
TspDTI	ATGAA	3 cut(s)	405, 435, 562
TspGWI	ACGGA	2 cut(s)	208, 352
TspRI	CASTG	2 cut(s)	267, 328
Tth111I	GACNNNGTC	2 cut(s)	246, 617
Vha464I	CTTAAG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	2 cut(s)	159, 176
ZraI	GACGTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.