FvH4_6g12151

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005403
Physical Location & Seq
Forward (+)
7347232 .. 7350119
2888 bp
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UTR
Exon/CDS
Intron
FvH4_6g12151.t2

Sequence Viewer

Length: 687 bp
ATGGCGCATAAGCTTTCAAACGAGGCTGTTCTGGAGCAGCTCAAGAATGGATTTGCTCAGTTCGAGCTCGTCTCCTCCCCACTTCTCTCGATTTCCGCGTCCATTTCTCAGCCAAACGCCACGCCGTTCACCGGAGACCACAGTCACCGCTTCTTCGCCAGAATCGGACCGCCACTAGGCAGAGGGTCTTCGGCCATGAGGAAAGTCGAACGCTACTCCGTTCAGAGAGTTACCGGCGATGGACGCTGTCTATTTCGTGCCCTGGTAAAAGGAATGGCAGCAAATAAAGGGTCTCCTCTTAGCCCAAGGGAAGAGAGAGACAATGCAGATGAGCTACGGATGGCTGTTAAAGAGGTTATTTGCGAGAATGAGGAAGAACGTCCCCAGTATGAAGCAGCTTTAGTGGCAATTACTGTTGATGAACCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGTGGAGAATCAGAGCTACTGGTGCTCTCAAAATTGTGTAGACAGCCAATCATCGTCTATATTCCAGAGCATGAGCACACAAATGGTGGAAGGGGTTCTGGTTTCATTCCCATTGCAGAATACGGAAGAGAGTTCAGTAAAGGTTCGAGAAACAGAAAGCCCAGGAAGGCCGTGAGGCTCTTGTTCAGTGGCAGGAACCATTACGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

229

Amino Acids

25.62

Weight (kDa)

9.36

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 79 - 166 8e-08 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 96, 148, 170
AclI AACGTT 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 131, 176
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 261, 629
AluBI AGCT 6 cut(s) 13, 40, 67, 334, 398, 484
AluI AGCT 6 cut(s) 13, 40, 67, 334, 398, 484
Alw21I GWGCWC 3 cut(s) 69, 495, 546
Alw26I GTCTC 4 cut(s) 76, 129, 297, 312
AoxI GGCC 2 cut(s) 192, 636
ApeKI GCWGC 3 cut(s) 37, 278, 395
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 121, 137
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 3 cut(s) 69, 495, 546
BbvI GCAGC 3 cut(s) 49, 290, 407
BccI CCATC 2 cut(s) 233, 334
BceAI ACGGC 2 cut(s) 109, 623
BciT130I CCWGG 2 cut(s) 263, 631
BcoDI GTCTC 4 cut(s) 76, 129, 297, 312
BfaI CTAG 1 cut(s) 176
BisI GCNGC 3 cut(s) 38, 279, 396
BlsI GCNGC 3 cut(s) 39, 280, 397
Bme1390I CCNGG 2 cut(s) 263, 631
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 2 cut(s) 263, 631
BmrI ACTGGG 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 26
BsaI GGTCTC 2 cut(s) 129, 297
BsaJI CCNNGG 3 cut(s) 261, 305, 629
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 176
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 385, 492
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 263, 631
BseDI CCNNGG 3 cut(s) 261, 305, 629
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 131, 176
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 71, 122
BseNI ACTGG 2 cut(s) 385, 492
BseRI GAGGAG 2 cut(s) 64, 285
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 3 cut(s) 49, 290, 407
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 194, 638
BsiHKAI GWGCWC 3 cut(s) 69, 495, 546
BsiSI CCGG 2 cut(s) 132, 234
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 131, 176
BsmAI GTCTC 4 cut(s) 76, 129, 297, 312
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 194, 638
Bso31I GGTCTC 2 cut(s) 129, 297
Bsp1286I GDGCHC 4 cut(s) 69, 262, 495, 546
Bsp143I GATC 1 cut(s) 673
BspACI CCGC 3 cut(s) 96, 148, 170
BspANI GGCC 2 cut(s) 194, 638
BspCNI CTCAG 2 cut(s) 70, 121
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 665
BspTNI GGTCTC 2 cut(s) 129, 297
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 385, 492
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 261, 305, 629
BssMI GATC 1 cut(s) 673
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 263, 631
Bst4CI ACNGT 2 cut(s) 143, 415
Bst6I CTCTTC 2 cut(s) 306, 589
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 57, 108, 299
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 4 cut(s) 76, 129, 297, 312
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 3 cut(s) 243, 404, 490
BstNI CCWGG 2 cut(s) 263, 631
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 261, 629
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 49, 290, 407
BstV2I GAAGAC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 194, 638
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 443
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 167
CpoI CGGWCCG 1 cut(s) 167
CseI GACGC 2 cut(s) 87, 252
CspI CGGWCCG 1 cut(s) 167
CviAII CATG 2 cut(s) 196, 539
DdeI CTNAG 3 cut(s) 57, 108, 299
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 306, 589
EarI CTCTTC 2 cut(s) 306, 589
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 129, 297
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 261, 629
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 2 cut(s) 199, 542
FaiI YATR 6 cut(s) 9, 197, 390, 528, 540, 685
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 195, 538
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 3 cut(s) 38, 279, 396
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 38, 279, 396
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 38, 279, 396
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 194, 638
HapII CCGG 2 cut(s) 132, 234
HgaI GACGC 2 cut(s) 87, 252
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 199, 542
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 162, 447, 476
HpaII CCGG 2 cut(s) 132, 234
HphI GGTGA 2 cut(s) 121, 137
Hpy166II GTNNAC 2 cut(s) 129, 509
Hpy188I TCNGA 3 cut(s) 167, 225, 481
Hpy188III TCNNGA 5 cut(s) 32, 43, 88, 533, 615
Hpy8I GTNNAC 2 cut(s) 129, 509
HpyAV CCTTC 2 cut(s) 552, 628
HpyCH4III ACNGT 2 cut(s) 143, 415
HpyCH4IV ACGT 2 cut(s) 379, 433
HpyCH4V TGCA 2 cut(s) 326, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 404, 490
HpyF3I CTNAG 3 cut(s) 57, 108, 299
HpySE526I ACGT 2 cut(s) 379, 433
Hsp92II CATG 2 cut(s) 199, 542
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 3 cut(s) 49, 290, 407
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 379, 433
MaeIII GTNAC 3 cut(s) 143, 229, 434
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 5 cut(s) 145, 180, 323, 386, 606
MhlI GDGCHC 4 cut(s) 69, 262, 495, 546
MluCI AATT 2 cut(s) 408, 500
MnlI CCTC 8 cut(s) 16, 85, 176, 192, 306, 346, 364, 636
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 2 cut(s) 348, 428
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 2 cut(s) 132, 234
MspR9I CCNGG 2 cut(s) 263, 631
MvaI CCWGG 2 cut(s) 263, 631
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 243, 404, 490
NdeII GATC 1 cut(s) 673
NlaIII CATG 2 cut(s) 199, 542
NlaIV GGNNCC 1 cut(s) 665
NmuCI GTSAC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 3 cut(s) 162, 447, 476
PflFI GACNNNGTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 39, 280, 397
PshAI GACNNNNGTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 261, 629
PspGI CCWGG 2 cut(s) 261, 629
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 549
Rsr2I CGGWCCG 1 cut(s) 167
RsrII CGGWCCG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 348, 428
SatI GCNGC 3 cut(s) 38, 279, 396
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 263, 631
SduI GDGCHC 4 cut(s) 69, 262, 495, 546
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 408, 500
SsiI CCGC 3 cut(s) 96, 148, 170
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 261, 629
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 143, 415
TaiI ACGT 2 cut(s) 382, 436
TaqI TCGA 4 cut(s) 63, 89, 207, 614
TasI AATT 2 cut(s) 408, 500
TfiI GAWTC 3 cut(s) 162, 447, 476
Tru1I TTAA 2 cut(s) 348, 428
Tru9I TTAA 2 cut(s) 348, 428
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 37, 278, 395
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 405, 435, 562
TspGWI ACGGA 3 cut(s) 208, 352, 606
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.