Rh3AG126500

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005403
Physical Location & Seq
Forward (+)
10936080 .. 10937832
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG126500.1

Sequence Viewer

Length: 288 bp
ATGAAGCAGCCCGGAAGGCAATTAATGCTGCACTCTATTAAACGAGGTTACTGTGATCGTATCAGAGAACCTGATTTCTGGGGAGGAGAGTCGGAGCTACTGGTGCTGTCGCAGTTACTAAAGCAGCCGATCATTGTGTATAAACGAGCGGATGAGCACACAAATGGTGGAGGGGGTTCTGCTTTCATTCCCATTGAAGAATATGGAACCGAGTTTACGCCCAAGAAGGCTGTGAGGCTCTTGTTAATTCACTTAAGTGACAGGAACCATTATGATCTACTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

7.91

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 10 - 91 1.4e-08 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 7, 28, 124
AseI ATTAAT 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 15, 19, 136
BcnI CCSGG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 8, 29, 125
BlsI GCNGC 3 cut(s) 9, 30, 126
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 208, 266
BmrFI CCNGG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 3 cut(s) 15, 19, 136
BsgI GTGCAG 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 55, 129, 274
BspACI CCGC 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 208, 266
BspTI CTTAAG 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 105
BssMI GATC 3 cut(s) 55, 129, 274
Bst4CI ACNGT 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 3 cut(s) 58, 132, 277
BstMBI GATC 3 cut(s) 55, 129, 274
BstMWI GCNNNNNNNGC 3 cut(s) 16, 25, 103
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 15, 19, 136
BtsCI GGATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 10, 97, 127, 230, 238
CviKI_1 RGCY 5 cut(s) 10, 97, 127, 230, 238
DpnI GATC 3 cut(s) 57, 131, 276
DpnII GATC 3 cut(s) 55, 129, 274
FaiI YATR 4 cut(s) 141, 204, 273, 286
Fnu4HI GCNGC 3 cut(s) 8, 29, 125
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 8, 29, 125
GluI GCNGC 3 cut(s) 8, 29, 125
HapII CCGG 1 cut(s) 12
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 65, 94
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 9, 220
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 25, 103
Kzo9I GATC 3 cut(s) 55, 129, 274
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 25, 64, 84, 86, 247
Lsp1109I GCAGC 3 cut(s) 15, 19, 136
MaeIII GTNAC 3 cut(s) 47, 114, 257
MalI GATC 3 cut(s) 57, 131, 276
MbiI CCGCTC 1 cut(s) 149
MboI GATC 3 cut(s) 55, 129, 274
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 20, 246
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 38, 77, 164, 228
MseI TTAA 4 cut(s) 23, 39, 245, 254
MslI CAYNNNNRTG 2 cut(s) 162, 255
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 16, 25, 103
NciI CCSGG 1 cut(s) 12
NdeII GATC 3 cut(s) 55, 129, 274
NlaIV GGNNCC 2 cut(s) 208, 266
NmuCI GTSAC 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 255
PkrI GCNGC 3 cut(s) 9, 30, 126
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 208, 266
PsrI GAACNNNNNNTAC 2 cut(s) 199, 231
RseI CAYNNNNRTG 2 cut(s) 162, 255
SaqAI TTAA 4 cut(s) 23, 39, 245, 254
SatI GCNGC 3 cut(s) 8, 29, 125
Sau3AI GATC 3 cut(s) 55, 129, 274
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 159
SetI ASST 3 cut(s) 49, 73, 99
SmiMI CAYNNNNRTG 2 cut(s) 162, 255
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 20, 246
SsiI CCGC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 53
TasI AATT 2 cut(s) 20, 246
Tru1I TTAA 4 cut(s) 23, 39, 245, 254
Tru9I TTAA 4 cut(s) 23, 39, 245, 254
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 7, 28, 124
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 17, 175
Vha464I CTTAAG 1 cut(s) 253
VspI ATTAAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.