Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005403

Physical Location & Seq

Genomic Coordinates Reverse (-)

16182410 .. 16185054

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13190.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGTGCCAAGGCCCAAACTACAAACAGCTTCTCTTGCAGACTACGACGCCGTTTCAACCCCCCACGCATTTGCTTTATCCGGTCTCAGCCTTCACATCCATCCACTGGTCGTCGTCCCGGAGCATCTTTCTCCATGGCAGAGTCAATTCTCGAGCAGCTAAGGAATGGAACTGCTCGGTTCGAGCTCGCCGCCTCCCCCGTCCTTTCAATTTCAACTTCCAATTCTCCGGTGAACCCAACGGCGTCGTTCGGGGACCACAGCCACCGGTTCTTCGCTAGAATTGGACCGCCACTAGGCAGAGGATCGTCGGCGATGAAGAAAGTTGAACGTTTTTCGGTTCAGAAAGTTACCGGCGACGGACGCTGTTTATTTCGTGCTCTGGTGAAAGGAATGGCTTTGAATAAAGGGGTTCCTCTTAGCCCAAGGCAAGAGAAAGATGATGCAGACGAACTACGGATGGCTGTGAAAGAGGTTATATGCGAAGATGAGGAAGAGCGTGTTAAGTATGAACCTGCTCTGGTTGCAATCACTGTCGATGAGTCCTTAAAGCGTTACTGCCAGCGCATCAATAGACCAGATTTCTGGGGAGGAGAGTCCGAGCTGCTGGTTCTGTCAAAGTTATGTGGGCAGCCAATCACTGTTTACATACCGGAGCATGAGCATACAAATGGTGGACGGGGTTCTGGTTTCATTCCGATTGCAGAATATGGAAGCGAGTTTACTAAAGGTTCTAGAAACAAAAAGCCCAGAAAGGTTGTGAGACTCCTATACAGTGGCAGGAACCATTATGATCTGCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

269

Amino Acids

29.9

Weight (kDa)

9.76

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38025 AT2G38025
fragaria_vesca	FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12151 FvH4_6g12160 FvH4_6g12160
malus_domestica	MD04G1146300.v1.1 MD12G1159500.v1.1
prunus_persica	Prupe.6G270100_v2.0.a1 Prupe.6G270100_v2.0.a1
pyrus_communis	pycom04g13190 pycom12g15120
rosa_chinensis	RchiOBHm_Chr3g0463951 RchiOBHm_Chr3g0463961
rosa_laevigata	RLG00000012727 RLG00000018964 RLG00000024732
rosa_multiflora	Rmu_sc0006492.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416110
rosa_rugosa	Rorug03G0069600
rosa_samantha	Rh3AG126400 Rh3AG126500 Rh3BG130500 Rh3BG130600 Rh3CG133000 Rh3DG131900
rosa_wichuraiana	Rw3G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	2 cut(s)	192, 290
AclI	AACGTT	1 cut(s)	331
AclWI	GGATC	1 cut(s)	313
AcyI	GRCGYC	2 cut(s)	49, 245
AfiI	CCNNNNNNNGG	2 cut(s)	107, 296
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	58, 210, 216, 329, 403
AluBI	AGCT	4 cut(s)	30, 160, 187, 604
AluI	AGCT	4 cut(s)	30, 160, 187, 604
Alw21I	GWGCWC	2 cut(s)	189, 382
Alw26I	GTCTC	2 cut(s)	90, 757
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	157, 604, 631
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	3 cut(s)	13, 256, 287
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	244, 397
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	256, 287
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	706, 738
Bbv12I	GWGCWC	2 cut(s)	189, 382
BbvI	GCAGC	3 cut(s)	169, 591, 643
BccI	CCATC	2 cut(s)	109, 454
BceAI	ACGGC	2 cut(s)	36, 258
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	90, 757
BfaI	CTAG	3 cut(s)	279, 296, 735
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	4 cut(s)	158, 192, 605, 632
BlsI	GCNGC	4 cut(s)	159, 193, 606, 633
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	256, 287
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	13, 256, 287
BmiI	GGNNCC	3 cut(s)	257, 414, 785
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	134, 433, 576
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	49, 245
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	9, 135, 425
BsaWI	WCCGGW	4 cut(s)	81, 229, 267, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 296
Bse118I	RCCGGY	2 cut(s)	267, 353
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	9, 135, 425
BseGI	GGATG	3 cut(s)	97, 101, 465
BseLI	CCNNNNNNNGG	2 cut(s)	107, 296
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	169, 591, 643
BshFI	GGCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	189, 382
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	6 cut(s)	82, 120, 230, 268, 354, 653
BslFI	GGGAC	2 cut(s)	102, 269
BslI	CCNNNNNNNGG	2 cut(s)	107, 296
BsmAI	GTCTC	2 cut(s)	90, 757
BsmFI	GGGAC	2 cut(s)	102, 269
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	189, 382
Bsp143I	GATC	2 cut(s)	305, 793
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	192, 290
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	257, 414, 785
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	267, 353
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	2 cut(s)	267, 353
BssECI	CCNNGG	3 cut(s)	9, 135, 425
BssMI	GATC	2 cut(s)	305, 793
BssNI	GRCGYC	2 cut(s)	49, 245
BssT1I	CCWWGG	3 cut(s)	9, 135, 425
Bst4CI	ACNGT	3 cut(s)	535, 643, 776
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	2 cut(s)	49, 245
BstC8I	GCNNGC	2 cut(s)	189, 563
BstDEI	CTNAG	3 cut(s)	87, 161, 419
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	97, 101, 465
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	308, 796
BstMAI	GTCTC	2 cut(s)	90, 757
BstMBI	GATC	2 cut(s)	305, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 363, 524
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	169, 591, 643
BstXI	CCANNNNNNTGG	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	97, 101, 465
BtsIMutI	CAGTG	4 cut(s)	105, 531, 639, 781
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	189, 563
CfoI	GCGC	1 cut(s)	567
Cfr10I	RCCGGY	2 cut(s)	267, 353
Cfr13I	GGNCC	3 cut(s)	13, 256, 287
CseI	GACGC	3 cut(s)	57, 234, 372
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	2 cut(s)	136, 659
DdeI	CTNAG	3 cut(s)	87, 161, 419
DpnI	GATC	2 cut(s)	307, 795
DpnII	GATC	2 cut(s)	305, 793
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	9, 135, 425
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	256, 287
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	187
EcoT14I	CCWWGG	3 cut(s)	9, 135, 425
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	9, 135, 425
FaeI	CATG	2 cut(s)	139, 662
FaqI	GGGAC	2 cut(s)	102, 269
FatI	CATG	2 cut(s)	135, 658
Fnu4HI	GCNGC	4 cut(s)	158, 192, 605, 632
FokI	GGATG	3 cut(s)	84, 88, 472
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	158, 192, 605, 632
FspBI	CTAG	3 cut(s)	279, 296, 735
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	158, 192, 605, 632
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	6 cut(s)	82, 120, 230, 268, 354, 653
HgaI	GACGC	3 cut(s)	57, 234, 372
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	2 cut(s)	49, 245
Hin1II	CATG	2 cut(s)	139, 662
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	4 cut(s)	143, 542, 596, 765
HpaII	CCGG	6 cut(s)	82, 120, 230, 268, 354, 653
HphI	GGTGA	2 cut(s)	244, 397
Hpy166II	GTNNAC	4 cut(s)	235, 646, 677, 723
Hpy188I	TCNGA	3 cut(s)	345, 601, 699
Hpy188III	TCNNGA	2 cut(s)	152, 735
Hpy8I	GTNNAC	4 cut(s)	235, 646, 677, 723
Hpy99I	CGWCG	5 cut(s)	51, 117, 250, 313, 362
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	3 cut(s)	535, 643, 776
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	39, 446, 527, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 363, 524
HpyF3I	CTNAG	3 cut(s)	87, 161, 419
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	2 cut(s)	49, 245
Hsp92II	CATG	2 cut(s)	139, 662
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	305, 793
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	122, 655
Lsp1109I	GCAGC	3 cut(s)	169, 591, 643
LweI	GCATC	3 cut(s)	134, 433, 576
MaeI	CTAG	3 cut(s)	279, 296, 735
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	349, 554
MalI	GATC	2 cut(s)	307, 795
MboI	GATC	2 cut(s)	305, 793
MboII	GAAGA	4 cut(s)	265, 331, 497, 506
MhlI	GDGCHC	2 cut(s)	189, 382
MluCI	AATT	4 cut(s)	147, 210, 223, 282
MlyI	GAGTC	4 cut(s)	152, 551, 605, 759
MnlI	CCTC	6 cut(s)	205, 296, 426, 466, 484, 584
MseI	TTAA	2 cut(s)	504, 548
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	6 cut(s)	82, 120, 230, 268, 354, 653
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	36, 363, 524
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	305, 793
NlaIII	CATG	2 cut(s)	139, 662
NlaIV	GGNNCC	3 cut(s)	257, 414, 785
PaeR7I	CTCGAG	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	118
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	159, 193, 606, 633
PleI	GAGTC	4 cut(s)	151, 550, 604, 759
PpsI	GAGTC	4 cut(s)	151, 550, 604, 759
Psp124BI	GAGCTC	1 cut(s)	189
Psp1406I	AACGTT	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	257, 414, 785
PspPI	GGNCC	3 cut(s)	13, 256, 287
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	504, 548
SatI	GCNGC	4 cut(s)	158, 192, 605, 632
Sau3AI	GATC	2 cut(s)	305, 793
Sau96I	GGNCC	3 cut(s)	13, 256, 287
SchI	GAGTC	4 cut(s)	152, 551, 605, 759
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	189, 382
SetI	ASST	9 cut(s)	32, 162, 189, 334, 477, 517, 606, 733, 759
SfaNI	GCATC	3 cut(s)	134, 433, 576
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	256, 287
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	147, 210, 223, 282
SsiI	CCGC	2 cut(s)	192, 290
SspMI	CTAG	3 cut(s)	279, 296, 735
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	3 cut(s)	9, 135, 425
TaaI	ACNGT	3 cut(s)	535, 643, 776
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	153, 183, 537
TasI	AATT	4 cut(s)	147, 210, 223, 282
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	504, 548
Tru9I	TTAA	2 cut(s)	504, 548
TscAI	CASTG	4 cut(s)	112, 538, 646, 781
TseI	GCWGC	3 cut(s)	157, 604, 631
TspDTI	ATGAA	3 cut(s)	332, 525, 682
TspGWI	ACGGA	2 cut(s)	375, 472
TspRI	CASTG	4 cut(s)	112, 538, 646, 781
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	256, 287
XbaI	TCTAGA	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	3 cut(s)	279, 296, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.