RH3CG133000

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0005403
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG133000.1

Sequence Viewer

Length: 528 bp
ATGGACGCTGTCTATTTCGTGCACTGGTATTTCGCTTTTTTATTTATTTATTTTTTGGTTAAATTTAGTTTAGACTTACTTACATACTGGACTTGCACACACTTAAATCTTAATCAGGTAAAAGGGATGGCAGCAAATAAAGGGTCACCTCTTAGCCCAAGGGAAGAGAGAGACACTGCAGATGAGCTACGGATGGCTGTGAAAGAGGTTATATGCGAAAATGAGGAAGAACGCCCCCAGTATGAAGCAGCTATAGTGGCAATTACTGTCGATGAATCCTTAAAACGTTACTGCCAGCGAATCCAAAGACCTGATTTCTGGGGAGGAGAGTCGGAGCTGCTGGTGCTGTCGCAGTTACTAAAGCAGCCGATCATTGTGTATAAACGAGCGGATGAGCACACAAATGGTGGAGGGGGTTCTGCTTTCATTCCCATTGAAGAATATGGAACCGAGTTTACGCCCAAGAAGGCTGTGAGGCTCTTGTTAATTCACTTAAGTGACAGGAACCATTATGATCTACTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

175

Amino Acids

20.28

Weight (kDa)

5.39

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 56 - 171 2.3e-09 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 1 cut(s) 389
AclI AACGTT 1 cut(s) 286
AcsI RAATTY 1 cut(s) 62
AflII CTTAAG 1 cut(s) 493
AgsI TTSAA 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 495
AluBI AGCT 3 cut(s) 187, 251, 337
AluI AGCT 3 cut(s) 187, 251, 337
Alw21I GWGCWC 2 cut(s) 24, 399
Alw26I GTCTC 1 cut(s) 165
Alw44I GTGCAC 1 cut(s) 20
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 4 cut(s) 131, 248, 337, 364
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AsuHPI GGTGA 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 24, 399
BbvI GCAGC 4 cut(s) 143, 260, 324, 376
BccI CCATC 2 cut(s) 121, 187
BcoDI GTCTC 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 177, 252
BfrI CTTAAG 1 cut(s) 493
BisI GCNGC 4 cut(s) 132, 249, 338, 365
BlsI GCNGC 4 cut(s) 133, 250, 339, 366
BmiI GGNNCC 2 cut(s) 448, 506
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 29, 92, 238
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 3 cut(s) 132, 198, 397
BseNI ACTGG 3 cut(s) 29, 92, 238
BseRI GAGGAG 1 cut(s) 339
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 4 cut(s) 143, 260, 324, 376
BsiHKAI GWGCWC 2 cut(s) 24, 399
BsmAI GTCTC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 24, 399
Bsp143I GATC 2 cut(s) 369, 514
BspACI CCGC 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 448, 506
BspMAI CTGCAG 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 389
BsrI ACTGG 3 cut(s) 29, 92, 238
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 369, 514
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 144
BstF5I GGATG 3 cut(s) 132, 198, 397
BstKTI GATC 2 cut(s) 372, 517
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 2 cut(s) 369, 514
BstMWI GCNNNNNNNGC 2 cut(s) 257, 343
BstPI GGTNACC 1 cut(s) 144
BstSFI CTRYAG 2 cut(s) 177, 252
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 143, 260, 324, 376
BtsCI GGATG 3 cut(s) 132, 198, 397
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 22, 174
Cac8I GCNNGC 1 cut(s) 296
CseI GACGC 1 cut(s) 14
CviJI RGCY 8 cut(s) 156, 187, 197, 251, 337, 367, 470, 478
CviKI_1 RGCY 8 cut(s) 156, 187, 197, 251, 337, 367, 470, 478
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 371, 516
DpnII GATC 2 cut(s) 369, 514
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaiI YATR 9 cut(s) 85, 212, 214, 243, 254, 381, 444, 513, 526
Fnu4HI GCNGC 4 cut(s) 132, 249, 338, 365
FokI GGATG 3 cut(s) 139, 205, 404
Fsp4HI GCNGC 4 cut(s) 132, 249, 338, 365
GluI GCNGC 4 cut(s) 132, 249, 338, 365
HgaI GACGC 1 cut(s) 14
HinfI GANTC 3 cut(s) 275, 300, 329
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 22, 456
Hpy188I TCNGA 1 cut(s) 334
Hpy8I GTNNAC 2 cut(s) 22, 456
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 22, 96, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 343
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 286
Kzo9I GATC 2 cut(s) 369, 514
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 10, 73, 101, 251, 304, 308, 324, 326, 487
Lsp1109I GCAGC 4 cut(s) 143, 260, 324, 376
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 4 cut(s) 144, 287, 354, 497
MalI GATC 2 cut(s) 371, 516
MbiI CCGCTC 1 cut(s) 389
MboI GATC 2 cut(s) 369, 514
MboII GAAGA 3 cut(s) 176, 239, 449
MhlI GDGCHC 2 cut(s) 24, 399
MluCI AATT 3 cut(s) 62, 261, 486
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 159, 199, 217, 317, 404, 468
MseI TTAA 6 cut(s) 60, 104, 111, 281, 485, 494
MslI CAYNNNNRTG 2 cut(s) 402, 495
MspCI CTTAAG 1 cut(s) 493
MwoI GCNNNNNNNGC 2 cut(s) 257, 343
NdeII GATC 2 cut(s) 369, 514
NlaIV GGNNCC 2 cut(s) 448, 506
NmuCI GTSAC 2 cut(s) 144, 497
OliI CACNNNNGTG 1 cut(s) 495
PfeI GAWTC 2 cut(s) 275, 300
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 133, 250, 339, 366
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 448, 506
PsrI GAACNNNNNNTAC 2 cut(s) 439, 471
PstI CTGCAG 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 402, 495
SaqAI TTAA 6 cut(s) 60, 104, 111, 281, 485, 494
SatI GCNGC 4 cut(s) 132, 249, 338, 365
Sau3AI GATC 2 cut(s) 369, 514
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 2 cut(s) 24, 399
SetI ASST 8 cut(s) 120, 151, 189, 210, 253, 289, 313, 339
SfcI CTRYAG 2 cut(s) 177, 252
SmiMI CAYNNNNRTG 2 cut(s) 402, 495
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 3 cut(s) 62, 261, 486
SsiI CCGC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 62, 261, 486
TfiI GAWTC 2 cut(s) 275, 300
Tru1I TTAA 6 cut(s) 60, 104, 111, 281, 485, 494
Tru9I TTAA 6 cut(s) 60, 104, 111, 281, 485, 494
TscAI CASTG 2 cut(s) 29, 181
TseFI GTSAC 2 cut(s) 144, 497
TseI GCWGC 4 cut(s) 131, 248, 337, 364
Tsp45I GTSAC 2 cut(s) 144, 497
TspDTI ATGAA 3 cut(s) 258, 288, 415
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 2 cut(s) 29, 181
Tth111I GACNNNGTC 1 cut(s) 8
Vha464I CTTAAG 1 cut(s) 493
VneI GTGCAC 1 cut(s) 20
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.