Rmu_sc0000124.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000124.1
OG0018178
Physical Location & Seq
Forward (+)
197016 .. 199935
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
atggcgaagcagccacccatagggccaaagcgtccggcccaggcccagaagaaggagggccagtcttccgattgggtctccgggacagatccgtcagacgcgtcgcgaagatggatgggagtaggcccattcgatgtttgctcctacatcagccaaatcccaagcggggggagcttcttcaccaaccaggtccaacttcatgttccgcgaaacgacgaccagattggaaatgctcatggcggtgttgttgccacaaacccaattcaagcattggttggaaatgctcatggaggaggctccggcgctacaaacccaattcaagcatcgtttggaaatgctcatggcggtgttgctgctacaaacccaattcaagaatcgtttggaaaattggtcagcaaagacaatgccataaaggttgaaaagctccgcccagacatgtcggatgtcactctcactgtaaaggttgttagtactaagatagtaggtattcaatttgctgagtgcttggttggcgatgaaactggaatgataatcttcagagctacaaacgatcaagtggacttgatgaaagtgggtttgactgtaactctgcaaaatgccaaagttgacatgttcaaagattcaatgaggcttgttgtcgacgaaagtggcagtgttcaagttgctgagcctgccggttttactgtgaaggaagatagcaacctctcactcattcaagcatcatttggaaatgtcaacaaagacgttgaaaagctccgcccagacatgtcggatgtcactctcactgtaaaggttgttagtactaagatagtaggtattcaatttgctgagtgcttggttggcgatgaaactggaatgataatcttcagagctacaaacgatcaagtggacttgatgaaagtgggtttgactgtaactctgcaaaatgccaaagttgacatgttcaaagattcaatgaggcttgttgtcgacgaaagtggcagtgttcaagttgctgagcctgccggttttactgtgaaggaagatagcaacctctcactcattcaagcatcatttggaaatgtcaacaaagacgttgaaaagctccgcccagacatgtcggatgtcactctcactgtaaaggttgttagtactaagatagtaggtattcaatttgctgagtgcttggttggcgatgaaactggaatgataatcttcagagctacaaacgatcaaggtgagtcagagatcatgactttactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

44.21

Weight (kDa)

4.93

Isoelectric Point (pI)

23.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 142 - 221 1.8e-25 Single-stranded DNA binding protein Ssb-like, OB fold
OB_Ssb-like PF21473 252 - 331 1.8e-25 Single-stranded DNA binding protein Ssb-like, OB fold
OB_Ssb-like PF21473 362 - 407 9e-07 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018178)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442351 RchiOBHm_Chr7g0219251
rosa_laevigata RLG00000006016
rosa_multiflora Rmu_co8418355.1_g000001 Rmu_sc0000124.1_g000049
rosa_roxburghii Rroxscaffold_5G00383220
rosa_rugosa Rorug04G0340500
rosa_samantha Rh4AG392200 Rh4BG405700 Rh4CG420800 Rh4DG398900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccI GTMKAC 2 cut(s) 639, 969
AccII CGCG 3 cut(s) 101, 106, 208
AciI CCGC 7 cut(s) 165, 206, 240, 345, 427, 757, 1087
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 3 cut(s) 520, 850, 1180
AfaI GTAC 3 cut(s) 472, 802, 1132
AfiI CCNNNNNNNGG 4 cut(s) 20, 52, 166, 167
AflIII ACRYGT 6 cut(s) 99, 435, 609, 765, 939, 1095
AjnI CCWGG 2 cut(s) 39, 186
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 7 cut(s) 174, 424, 542, 754, 872, 1084, 1202
AluI AGCT 7 cut(s) 174, 424, 542, 754, 872, 1084, 1202
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 83
AoxI GGCC 5 cut(s) 23, 36, 42, 58, 124
ApeKI GCWGC 2 cut(s) 10, 353
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 6 cut(s) 23, 37, 43, 58, 125, 190
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 172, 1229
AvaII GGWCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 22, 340
BccI CCATC 2 cut(s) 105, 109
BciT130I CCWGG 2 cut(s) 41, 188
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 306
BisI GCNGC 2 cut(s) 11, 354
BlpI GCTNAGC 2 cut(s) 666, 996
BlsI GCNGC 2 cut(s) 12, 355
BmcAI AGTACT 3 cut(s) 472, 802, 1132
Bme1390I CCNGG 3 cut(s) 41, 82, 188
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 6 cut(s) 23, 37, 43, 58, 125, 190
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 3 cut(s) 41, 82, 188
BmsI GCATC 3 cut(s) 332, 728, 1058
BpiI GAAGAC 1 cut(s) 57
Bpu1102I GCTNAGC 2 cut(s) 666, 996
BpuMI CCSGG 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 52, 166, 167
Bse118I RCCGGY 2 cut(s) 674, 1004
Bse1I ACTGG 4 cut(s) 61, 526, 856, 1186
BseBI CCWGG 2 cut(s) 41, 188
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 4 cut(s) 120, 448, 778, 1108
BseLI CCNNNNNNNGG 4 cut(s) 20, 52, 166, 167
BseMII CTCAG 5 cut(s) 489, 657, 819, 987, 1149
BseNI ACTGG 4 cut(s) 61, 526, 856, 1186
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 22, 340
Bsh1236I CGCG 3 cut(s) 101, 106, 208
BshFI GGCC 5 cut(s) 25, 38, 44, 60, 126
BsiSI CCGG 5 cut(s) 35, 81, 300, 675, 1005
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 4 cut(s) 20, 52, 166, 167
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 5 cut(s) 25, 38, 44, 60, 126
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 5 cut(s) 88, 550, 880, 1210, 1227
Bsp1720I GCTNAGC 2 cut(s) 666, 996
Bsp68I TCGCGA 1 cut(s) 106
BspACI CCGC 7 cut(s) 165, 206, 240, 345, 427, 757, 1087
BspANI GGCC 5 cut(s) 25, 38, 44, 60, 126
BspCNI CTCAG 5 cut(s) 490, 658, 820, 988, 1150
BspFNI CGCG 3 cut(s) 101, 106, 208
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 2 cut(s) 674, 1004
BsrI ACTGG 4 cut(s) 61, 526, 856, 1186
BssAI RCCGGY 2 cut(s) 674, 1004
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 5 cut(s) 88, 550, 880, 1210, 1227
Bst2UI CCWGG 2 cut(s) 41, 188
Bst4CI ACNGT 7 cut(s) 457, 583, 685, 787, 913, 1015, 1117
BstC8I GCNNGC 2 cut(s) 672, 1002
BstDEI CTNAG 8 cut(s) 474, 498, 666, 804, 828, 996, 1134, 1158
BstF5I GGATG 4 cut(s) 120, 448, 778, 1108
BstFNI CGCG 3 cut(s) 101, 106, 208
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 5 cut(s) 91, 553, 883, 1213, 1230
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 88, 550, 880, 1210, 1227
BstMWI GCNNNNNNNGC 6 cut(s) 171, 510, 671, 840, 1001, 1170
BstNI CCWGG 2 cut(s) 41, 188
BstNSI RCATGY 5 cut(s) 439, 613, 769, 943, 1099
BstSCI CCNGG 3 cut(s) 39, 80, 186
BstUI CGCG 3 cut(s) 101, 106, 208
BstV1I GCAGC 2 cut(s) 22, 340
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 5 cut(s) 25, 38, 44, 60, 126
BtgZI GCGATG 3 cut(s) 528, 858, 1188
BtsCI GGATG 4 cut(s) 120, 448, 778, 1108
BtsI GCAGTG 2 cut(s) 658, 988
BtsIMutI CAGTG 5 cut(s) 453, 658, 783, 988, 1113
BtuMI TCGCGA 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 672, 1002
CciI TCATGA 1 cut(s) 1230
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 674, 1004
Cfr13I GGNCC 6 cut(s) 23, 37, 43, 58, 125, 190
CseI GACGC 3 cut(s) 20, 90, 107
CsiI ACCWGGT 1 cut(s) 186
Csp6I GTAC 3 cut(s) 471, 801, 1131
CviQI GTAC 3 cut(s) 471, 801, 1131
DdeI CTNAG 8 cut(s) 474, 498, 666, 804, 828, 996, 1134, 1158
DpnI GATC 5 cut(s) 90, 552, 882, 1212, 1229
DpnII GATC 5 cut(s) 88, 550, 880, 1210, 1227
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EciI GGCGGA 3 cut(s) 416, 746, 1076
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 3 cut(s) 520, 850, 1180
EcoRII CCWGG 2 cut(s) 39, 186
FaqI GGGAC 1 cut(s) 97
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 2 cut(s) 639, 969
Fnu4HI GCNGC 2 cut(s) 11, 354
FokI GGATG 4 cut(s) 127, 455, 785, 1115
Fsp4HI GCNGC 2 cut(s) 11, 354
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 11, 354
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 5 cut(s) 25, 38, 44, 60, 126
HapII CCGG 5 cut(s) 35, 81, 300, 675, 1005
HgaI GACGC 3 cut(s) 20, 90, 107
HhaI GCGC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 6 cut(s) 607, 640, 736, 937, 970, 1066
HindII GTYRAC 6 cut(s) 607, 640, 736, 937, 970, 1066
HinfI GANTC 4 cut(s) 374, 620, 950, 1220
HpaII CCGG 5 cut(s) 35, 81, 300, 675, 1005
HphI GGTGA 2 cut(s) 172, 1229
Hpy166II GTNNAC 8 cut(s) 559, 607, 640, 736, 889, 937, 970, 1066
Hpy188I TCNGA 9 cut(s) 70, 97, 442, 539, 772, 869, 1102, 1199, 1225
Hpy188III TCNNGA 3 cut(s) 105, 371, 1231
Hpy8I GTNNAC 8 cut(s) 559, 607, 640, 736, 889, 937, 970, 1066
Hpy99I CGWCG 4 cut(s) 106, 218, 644, 974
HpyAV CCTTC 3 cut(s) 46, 682, 1012
HpyCH4III ACNGT 7 cut(s) 457, 583, 685, 787, 913, 1015, 1117
HpyCH4IV ACGT 2 cut(s) 744, 1074
HpyCH4V TGCA 2 cut(s) 592, 922
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 510, 671, 840, 1001, 1170
HpyF3I CTNAG 8 cut(s) 474, 498, 666, 804, 828, 996, 1134, 1158
HpySE526I ACGT 2 cut(s) 744, 1074
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 5 cut(s) 88, 550, 880, 1210, 1227
LmnI GCTCC 6 cut(s) 146, 171, 302, 429, 759, 1089
Lsp1109I GCAGC 2 cut(s) 22, 340
LweI GCATC 3 cut(s) 332, 728, 1058
MabI ACCWGGT 1 cut(s) 186
MaeII ACGT 2 cut(s) 744, 1074
MaeIII GTNAC 5 cut(s) 445, 583, 775, 913, 1105
MalI GATC 5 cut(s) 90, 552, 882, 1212, 1229
MboI GATC 5 cut(s) 88, 550, 880, 1210, 1227
MboII GAAGA 9 cut(s) 57, 61, 120, 169, 526, 704, 856, 1034, 1186
MflI RGATCY 1 cut(s) 88
MluCI AATT 7 cut(s) 261, 315, 366, 386, 491, 821, 1151
MluI ACGCGT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 1229
MmeI TCCRAC 5 cut(s) 217, 256, 420, 750, 1080
MnlI CCTC 7 cut(s) 49, 284, 287, 621, 713, 951, 1043
MslI CAYNNNNRTG 2 cut(s) 240, 345
MspI CCGG 5 cut(s) 35, 81, 300, 675, 1005
MspR9I CCNGG 3 cut(s) 41, 82, 188
MvaI CCWGG 2 cut(s) 41, 188
MvnI CGCG 3 cut(s) 101, 106, 208
MwoI GCNNNNNNNGC 6 cut(s) 171, 510, 671, 840, 1001, 1170
NciI CCSGG 1 cut(s) 82
NdeII GATC 5 cut(s) 88, 550, 880, 1210, 1227
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 3 cut(s) 445, 775, 1105
NruI TCGCGA 1 cut(s) 106
NspI RCATGY 5 cut(s) 439, 613, 769, 943, 1099
PagI TCATGA 1 cut(s) 1230
PciI ACATGT 5 cut(s) 435, 609, 765, 939, 1095
PfeI GAWTC 3 cut(s) 374, 620, 950
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 2 cut(s) 12, 355
PleI GAGTC 1 cut(s) 1228
PpsI GAGTC 1 cut(s) 1228
PscI ACATGT 5 cut(s) 435, 609, 765, 939, 1095
Psp6I CCWGG 2 cut(s) 39, 186
PspGI CCWGG 2 cut(s) 39, 186
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 6 cut(s) 23, 37, 43, 58, 125, 190
PsuI RGATCY 1 cut(s) 88
RruI TCGCGA 1 cut(s) 106
RsaI GTAC 3 cut(s) 472, 802, 1132
RsaNI GTAC 3 cut(s) 471, 801, 1131
RseI CAYNNNNRTG 2 cut(s) 240, 345
SalI GTCGAC 2 cut(s) 638, 968
SatI GCNGC 2 cut(s) 11, 354
Sau3AI GATC 5 cut(s) 88, 550, 880, 1210, 1227
Sau96I GGNCC 6 cut(s) 23, 37, 43, 58, 125, 190
ScaI AGTACT 3 cut(s) 472, 802, 1132
SchI GAGTC 1 cut(s) 1229
ScrFI CCNGG 3 cut(s) 41, 82, 188
SexAI ACCWGGT 1 cut(s) 186
SfaNI GCATC 3 cut(s) 332, 728, 1058
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 240, 345
Sse9I AATT 7 cut(s) 261, 315, 366, 386, 491, 821, 1151
SsiI CCGC 7 cut(s) 165, 206, 240, 345, 427, 757, 1087
StyD4I CCNGG 3 cut(s) 39, 80, 186
TaaI ACNGT 7 cut(s) 457, 583, 685, 787, 913, 1015, 1117
TaiI ACGT 2 cut(s) 747, 1077
TaqI TCGA 3 cut(s) 132, 639, 969
TasI AATT 7 cut(s) 261, 315, 366, 386, 491, 821, 1151
TatI WGTACW 3 cut(s) 470, 800, 1130
TfiI GAWTC 3 cut(s) 374, 620, 950
TscAI CASTG 5 cut(s) 460, 658, 790, 988, 1120
TseFI GTSAC 3 cut(s) 445, 775, 1105
TseI GCWGC 2 cut(s) 10, 353
Tsp45I GTSAC 3 cut(s) 445, 775, 1105
TspDTI ATGAA 6 cut(s) 188, 531, 581, 861, 911, 1191
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 5 cut(s) 460, 658, 790, 988, 1120
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 5 cut(s) 439, 613, 769, 943, 1099
XmiI GTMKAC 2 cut(s) 639, 969
ZrmI AGTACT 3 cut(s) 472, 802, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.