Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000145.1

Orthogroup ID

OG0017033

Physical Location & Seq

Genomic Coordinates Forward (+)

97992 .. 100203

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000145.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgttagcaaagcaggattggaggatactttctaatccccactcactgattgctaaattatacaaggctcgatactatccaaatcactctttttgggatgcagaattgggcgaagctccatctttctcttggagaagcattcttgaaagtagatctgtgcttgctgcagggagacaatggaaagttggtgatgggccaagattgagcctgcaatccccgttttccagaaaatgtattctgtccttgtattttcacttcttatcctctacttcatcaggaggcccttacctttttctgtggaagaaaatatggaatgcaagggtgccgggaagggtgaaaatctgtgtatggagaactgtgaaaaatatcctgcctacaagagagcagttcagtcataagggctacactagtccggggaattgtttgttatgtcaggaagtgtgtgagacaaacactcatgtctttcgccattgccctgttgctaaagaagctcttagaatagcagctatcccacttcaaagcagcatgccttgccatttcaaagattggatgttaactcaagggaagcatcttgacaacggaaattgggagaggttaattatgctggtctgggctctttggaagaacaggaacaagaagttgtggaatgaaatcactcaaacagcacaagccattgtagttggttcgttgacttggtatcagaaatttttacaagtgcaacaaatgcaaatgcaaagtcaagcagctaagcctagtaaatattggactccaccgccaactcaaaagcttaaaatcaatgttgatggagctttcctaccctctaagcatattgggggtataggtggagttatcagaagagaggatggctcttttgttgctggtttttctcagtcctttcaatatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

302

Amino Acids

34.7

Weight (kDa)

9.95

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017033)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000145.1_g000015
rosa_roxburghii	Rroxscaffold_7G00209340
rosa_rugosa	Rorug01G0112800 Rorug04G0067200 Rorug04G0116500 Rorug04G0173200 Rorug05G0147500 Rorug06G0073900 Rorug07G0100900 Rorug07G0104500
rosa_samantha	Rh1CG225300 Rh3AG269700 Rh4DG325500 Rh7DG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	146, 518, 541, 899
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	6 cut(s)	116, 491, 506, 746, 787, 809
AluI	AGCT	6 cut(s)	116, 491, 506, 746, 787, 809
Alw26I	GTCTC	2 cut(s)	166, 440
AoxI	GGCC	2 cut(s)	194, 280
ApeKI	GCWGC	4 cut(s)	164, 503, 522, 743
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AspS9I	GGNCC	2 cut(s)	194, 281
AsuC2I	CCSGG	2 cut(s)	327, 414
AsuHPI	GGTGA	2 cut(s)	200, 346
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbvI	GCAGC	4 cut(s)	151, 515, 534, 755
BccI	CCATC	4 cut(s)	127, 185, 797, 857
BciVI	GTATCC	1 cut(s)	18
BcnI	CCSGG	2 cut(s)	327, 414
BcoDI	GTCTC	2 cut(s)	166, 440
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	2 cut(s)	408, 753
BfmI	CTRYAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	4 cut(s)	165, 504, 523, 744
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	4 cut(s)	166, 505, 524, 745
Bme1390I	CCNGG	2 cut(s)	327, 414
BmgT120I	GGNCC	2 cut(s)	194, 281
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	327, 414
BmsI	GCATC	2 cut(s)	88, 577
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	327, 414
BsaJI	CCNNGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	3 cut(s)	103, 555, 868
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	902
BseXI	GCAGC	4 cut(s)	151, 515, 534, 755
BshFI	GGCC	2 cut(s)	196, 282
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	326, 413
BsmAI	GTCTC	2 cut(s)	166, 440
BsmI	GAATGC	2 cut(s)	138, 319
BsnI	GGCC	2 cut(s)	196, 282
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	152
Bsp1720I	GCTNAGC	1 cut(s)	747
BspACI	CCGC	1 cut(s)	773
BspANI	GGCC	2 cut(s)	196, 282
BspCNI	CTCAG	1 cut(s)	901
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	850
BstAPI	GCANNNNNTGC	2 cut(s)	531, 724
BstC8I	GCNNGC	3 cut(s)	162, 209, 527
BstDEI	CTNAG	4 cut(s)	494, 747, 822, 888
BstF5I	GGATG	3 cut(s)	103, 555, 868
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	166, 440
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 531, 724
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	325, 412
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	151, 515, 534, 755
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	196, 282
BtsCI	GGATG	3 cut(s)	103, 555, 868
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	162, 209, 527
Cfr13I	GGNCC	2 cut(s)	194, 281
CviAII	CATG	2 cut(s)	458, 526
DdeI	CTNAG	4 cut(s)	494, 747, 822, 888
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	616
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	2 cut(s)	461, 529
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	2 cut(s)	457, 525
Fnu4HI	GCNGC	4 cut(s)	165, 504, 523, 744
FokI	GGATG	3 cut(s)	110, 562, 875
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	4 cut(s)	165, 504, 523, 744
FspBI	CTAG	2 cut(s)	408, 753
GluI	GCNGC	4 cut(s)	165, 504, 523, 744
HaeIII	GGCC	2 cut(s)	196, 282
HapII	CCGG	2 cut(s)	326, 413
Hin1II	CATG	2 cut(s)	461, 529
HincII	GTYRAC	2 cut(s)	555, 690
HindII	GTYRAC	2 cut(s)	555, 690
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	1 cut(s)	766
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	2 cut(s)	326, 413
HphI	GGTGA	2 cut(s)	200, 346
Hpy166II	GTNNAC	2 cut(s)	555, 690
Hpy188I	TCNGA	2 cut(s)	702, 854
Hpy188III	TCNNGA	5 cut(s)	143, 225, 276, 434, 572
Hpy8I	GTNNAC	2 cut(s)	555, 690
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	7 cut(s)	101, 167, 211, 317, 718, 727, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 531, 724
HpyF3I	CTNAG	4 cut(s)	494, 747, 822, 888
Hsp92II	CATG	2 cut(s)	461, 529
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	121, 806
Lsp1109I	GCAGC	4 cut(s)	151, 515, 534, 755
LweI	GCATC	2 cut(s)	88, 577
MaeI	CTAG	2 cut(s)	408, 753
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	313, 634, 867
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	6 cut(s)	56, 104, 418, 583, 597, 704
MlyI	GAGTC	1 cut(s)	760
MnlI	CCTC	6 cut(s)	15, 272, 274, 585, 829, 853
MseI	TTAA	3 cut(s)	554, 596, 789
MspI	CCGG	2 cut(s)	326, 413
MspR9I	CCNGG	2 cut(s)	327, 414
Mva1269I	GAATGC	2 cut(s)	138, 319
MwoI	GCNNNNNNNGC	3 cut(s)	488, 531, 724
NciI	CCSGG	2 cut(s)	327, 414
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	461, 529
NlaIV	GGNNCC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	529
PaeI	GCATGC	1 cut(s)	529
PctI	GAATGC	2 cut(s)	138, 319
PkrI	GCNGC	4 cut(s)	166, 505, 524, 745
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	194, 281
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	554, 596, 789
SatI	GCNGC	4 cut(s)	165, 504, 523, 744
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	2 cut(s)	194, 281
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	2 cut(s)	327, 414
SduI	GDGCHC	1 cut(s)	616
SetI	ASST	9 cut(s)	118, 291, 493, 508, 596, 748, 789, 811, 844
SfaNI	GCATC	2 cut(s)	88, 577
SfcI	CTRYAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SpeI	ACTAGT	1 cut(s)	407
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	6 cut(s)	56, 104, 418, 583, 597, 704
SsiI	CCGC	1 cut(s)	773
SspI	AATATT	1 cut(s)	761
SspMI	CTAG	2 cut(s)	408, 753
StyD4I	CCNGG	2 cut(s)	325, 412
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	70
TasI	AATT	6 cut(s)	56, 104, 418, 583, 597, 704
Tru1I	TTAA	3 cut(s)	554, 596, 789
Tru9I	TTAA	3 cut(s)	554, 596, 789
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	4 cut(s)	164, 503, 522, 743
TspDTI	ATGAA	2 cut(s)	261, 663
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	2 cut(s)	408, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.