Rh7DG388500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017033
Physical Location & Seq
Reverse (-)
53161861 .. 53162235
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG388500.1

Sequence Viewer

Length: 375 bp
ATGCGTGAACCAGCTGCCAAACTGAGTAAACATTGGTCTCCACCATCTAGCAATCAGCTCAAAATCAAAGTTGATGGAGCTTTCTTGACGTCCAAGGACTTTGGAGGTATTGGTGGGGTAATCAGAAGGAGTGATGGCTCTTTTATAGCTGCCTTCTCAAAGTTTGTGCAACACGTCTCATCTCCATTGCAGGTGGAACTATTAGCAATTAGAGAAGGTCTGGACTTCATCAGGCAGAGAGGCCTTCATGATGTTTGCCTTGAAAGCGATTGTCAAGGAGCAATTCAGGCAATTAATATGGGGGAATGTGATCTACATGAGCATGCAAACTTGCTGCTCGATAGACACCAGGCTAGTCATTTGTGCATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

124

Amino Acids

13.63

Weight (kDa)

6.64

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 24 - 114 9.4e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
AatII GACGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 263
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 4 cut(s) 14, 58, 80, 149
AluI AGCT 4 cut(s) 14, 58, 80, 149
Alw26I GTCTC 2 cut(s) 42, 181
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 14, 149, 334
AseI ATTAAT 1 cut(s) 294
BbvI GCAGC 2 cut(s) 136, 321
BccI CCATC 3 cut(s) 52, 68, 128
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 42, 181
BfaI CTAG 2 cut(s) 48, 354
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 3 cut(s) 15, 150, 335
BlsI GCNGC 3 cut(s) 16, 151, 336
Bme1390I CCNGG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 136, 321
BshFI GGCC 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 42, 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 42, 181
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 264, 287
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 136, 321
BsuRI GGCC 1 cut(s) 243
BtrI CACGTC 1 cut(s) 175
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 247
CviAII CATG 3 cut(s) 248, 317, 323
CviJI RGCY 7 cut(s) 14, 58, 80, 138, 149, 243, 353
CviKI_1 RGCY 7 cut(s) 14, 58, 80, 138, 149, 243, 353
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 3 cut(s) 251, 320, 326
FaiI YATR 6 cut(s) 146, 249, 299, 318, 324, 368
FatI CATG 3 cut(s) 247, 316, 322
Fnu4HI GCNGC 3 cut(s) 15, 150, 335
Fsp4HI GCNGC 3 cut(s) 15, 150, 335
FspBI CTAG 2 cut(s) 48, 354
GluI GCNGC 3 cut(s) 15, 150, 335
HaeIII GGCC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 3 cut(s) 251, 320, 326
Hpy166II GTNNAC 2 cut(s) 8, 29
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 3 cut(s) 85, 221, 248
Hpy8I GTNNAC 2 cut(s) 8, 29
HpyAV CCTTC 4 cut(s) 120, 163, 209, 254
HpyCH4IV ACGT 2 cut(s) 89, 174
HpyCH4V TGCA 4 cut(s) 169, 190, 326, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 287
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 89, 174
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 3 cut(s) 251, 320, 326
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 77, 278
LpnPI CCDG 7 cut(s) 24, 176, 206, 217, 272, 335, 362
Lsp1109I GCAGC 2 cut(s) 136, 321
MaeI CTAG 2 cut(s) 48, 354
MaeII ACGT 2 cut(s) 89, 174
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MluCI AATT 3 cut(s) 207, 282, 291
MnlI CCTC 2 cut(s) 98, 233
MseI TTAA 2 cut(s) 294, 373
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 264, 287
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 251, 320, 326
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 243
PkrI GCNGC 3 cut(s) 16, 151, 336
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 294, 373
SatI GCNGC 3 cut(s) 15, 150, 335
Sau3AI GATC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 350
SetI ASST 9 cut(s) 16, 60, 82, 92, 109, 151, 177, 195, 220
SmiMI CAYNNNNRTG 1 cut(s) 321
SphI GCATGC 1 cut(s) 326
Sse9I AATT 3 cut(s) 207, 282, 291
SseBI AGGCCT 1 cut(s) 243
SspMI CTAG 2 cut(s) 48, 354
StuI AGGCCT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 2 cut(s) 92, 177
TaqI TCGA 1 cut(s) 339
TasI AATT 3 cut(s) 207, 282, 291
Tru1I TTAA 2 cut(s) 294, 373
Tru9I TTAA 2 cut(s) 294, 373
TseI GCWGC 3 cut(s) 14, 149, 334
TspDTI ATGAA 2 cut(s) 217, 236
VspI ATTAAT 1 cut(s) 294
XceI RCATGY 1 cut(s) 326
XspI CTAG 2 cut(s) 48, 354
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.