Rorug04G0173200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017033
Physical Location & Seq
Reverse (-)
30535377 .. 30535805
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173200.1

Sequence Viewer

Length: 429 bp
ATGGATGAAGTGTCGTTGATATGGTGTTATGTCCGGGGTCTACATGTTTTACTCTCGGTGTTTTCTTGTTGTCAATGTGGTAGTGACTTGCTCTTGCACGTGGTCTGGTTGGATTGGGACACGGTGTTGATGAAGGGGAAGTGGCTGTTTGTAATGTTGGCTGCAGGGATTTATCGTGACTCTCAGAAGTTTACTTATGCGGTAGCCCGAGTTGAGGGGCGATTGGTTTGGTTAGGGGTTGGGTCCTTTTGGCTCATGGATGTCATCATGGATGATGGACCCGTAACTGAGGGTGTTCTTAGGGAGGAGAGTGGGGAACTTATGTCCACCACTAGGGCTGTCAATGGGTCGTGTCGGGTCAAAGTATTTGTCGTGTCACAAGAGACAAACCCAAACCCAACCCATTTAATAATCGTGTCAAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

5.52

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 40
AciI CCGC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 423
AcvI CACGTG 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 214, 333
AflIII ACRYGT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspS9I GGNCC 2 cut(s) 243, 278
AsuC2I CCSGG 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 243, 278
BbrPI CACGTG 1 cut(s) 100
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 243, 278
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 243, 278
BmiI GGNNCC 2 cut(s) 244, 280
BmrFI CCNGG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 333
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 3 cut(s) 10, 265, 277
BseLI CCNNNNNNNGG 2 cut(s) 214, 333
BseMII CTCAG 2 cut(s) 197, 279
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 214, 333
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 207
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 196, 280
BspLI GGNNCC 2 cut(s) 244, 280
BspMAI CTGCAG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 183, 288, 299
BstF5I GGATG 3 cut(s) 10, 265, 277
BstMAI GTCTC 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 10, 265, 277
Cfr13I GGNCC 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 44, 256, 268
CviJI RGCY 5 cut(s) 145, 161, 206, 253, 338
CviKI_1 RGCY 5 cut(s) 145, 161, 206, 253, 338
DdeI CTNAG 3 cut(s) 183, 288, 299
Eco47I GGWCC 2 cut(s) 243, 278
Eco72I CACGTG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 243
FaeI CATG 3 cut(s) 47, 259, 271
FaiI YATR 7 cut(s) 22, 30, 45, 198, 257, 269, 323
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 43, 255, 267
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 3 cut(s) 17, 272, 284
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 34
Hin1II CATG 3 cut(s) 47, 259, 271
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 41, 192, 327
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 3 cut(s) 41, 192, 327
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 97, 164
HpyF3I CTNAG 3 cut(s) 183, 288, 299
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 3 cut(s) 47, 259, 271
LpnPI CCDG 3 cut(s) 47, 91, 150
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 4 cut(s) 83, 176, 283, 375
MluCI AATT 1 cut(s) 423
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 208, 283, 298
MseI TTAA 2 cut(s) 407, 427
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 35
NciI CCSGG 1 cut(s) 35
NlaIII CATG 3 cut(s) 47, 259, 271
NlaIV GGNNCC 2 cut(s) 244, 280
NmuCI GTSAC 3 cut(s) 83, 176, 375
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 173
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 243
PscI ACATGT 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 243
PspCI CACGTG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 244, 280
PspPI GGNCC 2 cut(s) 243, 278
PspPPI RGGWCCY 1 cut(s) 243
PstI CTGCAG 1 cut(s) 166
SaqAI TTAA 2 cut(s) 407, 427
SatI GCNGC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 243, 278
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 35
SetI ASST 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 243, 278
Sse9I AATT 1 cut(s) 423
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 423
Tru1I TTAA 2 cut(s) 407, 427
Tru9I TTAA 2 cut(s) 407, 427
TseFI GTSAC 3 cut(s) 83, 176, 375
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 3 cut(s) 83, 176, 375
TspDTI ATGAA 2 cut(s) 21, 146
VpaK11BI GGWCC 2 cut(s) 243, 278
XapI RAATTY 1 cut(s) 423
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.