Rorug06G0073900

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
9833731 .. 9844250
10520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0073900.1

Sequence Viewer

Length: 960 bp
ATGGTTGACGGAGTCTTAGTTGATTCATACAAGGTTGCGGAGTTCCCTGAAAATGTCAAGTTATATGGAATAGAATACCTGCTCTATGAACGTCCAAAGTACCCGATAAAGGAAGATGATGACACCACTAGAAATGGTCCTACGGCTAGAGGGGAGACGTCTGATACCGTGAAGGTGACAAGAAATATAAGAGATGAAACAGTTCGAGCTAGTGAACAGGGTAAGACCATGAAAAATGCTGGATGGGATTTCAGCATTGGATCACAGGGTACAGGGACTATTAGAAGTGTAGCAGCCGTAAAACCACCTCAGGCAAGAGAAAGAAAGCCAGAAGGCCGGTATAATCAGGTTACACCTGAAAGGCTCCCCGAGAATAGTAACCGACATTTGTCACCTGGGAGTGCACAACATGATTCGCATGAAGATGAAGATGAAGATTTGACTGTAAGTGGGTCTGGAACTGTTGTTATACGAACACCCAAAGGATCTCAGTCATCTTCTCAGTTTCGTGATCAAAACTCTCTGACCAGCAGCACATATGCTTCTTATGAAGATGCTTCTTCCAGTGGAACTGTTGTTTTTCGTGGCCAGCTTGATGATTCTGATTCTCCTCGAACGCCAAGATCGAGGCTGGGAATTCAAGAGAGAACTTCAAGTTCTTCAATTGAAGACAATGCCATGAATCTTGCAGAGGCAAAGGCAGCAATTCAAGGGAGGAAAGGAAATGCTAGAGAAAAGTCTGGGCTGACGAAGGTCAACTATGATTCGCAAGATAGCAGAATAGGGCGGATGACAAATAGCTCTGATTCTACCAGACAATCTGATGACTACTTTGACGCACCAAAAGCATCTTCAAGATCATCTCAAGCAAGTGATGATGAAGAAAGTGAAAAAGTAATGTCATCATCTGCAGCATTATCAATGCTGCTCATCCCTTCCCTGAAAGAGTTATGGGAATGA

Protein Analysis

319

Amino Acids

35.04

Weight (kDa)

5.15

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 87
AciI CCGC 2 cut(s) 38, 787
AclWI GGATC 2 cut(s) 268, 493
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 2 cut(s) 101, 271
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 6 cut(s) 641, 654, 663, 668, 710, 855
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AluBI AGCT 3 cut(s) 209, 592, 801
AluI AGCT 3 cut(s) 209, 592, 801
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 268, 493
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 2 cut(s) 334, 586
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 5 cut(s) 293, 531, 701, 911, 925
ApoI RAATTY 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 187, 384
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 406
BalI TGGCCA 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 5 cut(s) 305, 543, 713, 912, 923
BccI CCATC 1 cut(s) 237
BceAI ACGGC 2 cut(s) 159, 281
BciT130I CCWGG 1 cut(s) 396
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 4 cut(s) 129, 147, 210, 729
BfmI CTRYAG 1 cut(s) 909
BfuAI ACCTGC 1 cut(s) 87
BisI GCNGC 5 cut(s) 294, 532, 702, 912, 926
BlsI GCNGC 5 cut(s) 295, 533, 703, 913, 927
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 544, 857
BoxI GACNNNNGTC 2 cut(s) 388, 752
BpiI GAAGAC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 564
Bse21I CCTNAGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 3 cut(s) 248, 795, 930
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 323, 503, 515
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 5 cut(s) 305, 543, 713, 912, 923
BseYI CCCAGC 1 cut(s) 631
BshFI GGCC 2 cut(s) 336, 588
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 336, 588
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 5 cut(s) 260, 485, 511, 623, 857
BspACI CCGC 2 cut(s) 38, 787
BspANI GGCC 2 cut(s) 336, 588
BspCNI CTCAG 3 cut(s) 322, 502, 514
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 268, 493
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 1 cut(s) 564
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 5 cut(s) 260, 485, 511, 623, 857
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 5 cut(s) 169, 202, 445, 463, 574
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 590
BstDEI CTNAG 4 cut(s) 16, 309, 489, 501
BstF5I GGATG 3 cut(s) 248, 795, 930
BstKTI GATC 5 cut(s) 263, 488, 514, 626, 860
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 5 cut(s) 260, 485, 511, 623, 857
BstMWI GCNNNNNNNGC 2 cut(s) 701, 845
BstNI CCWGG 1 cut(s) 396
BstPAI GACNNNNGTC 2 cut(s) 388, 752
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 5 cut(s) 305, 543, 713, 912, 923
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 336, 588
BtsCI GGATG 3 cut(s) 248, 795, 930
BtsIMutI CAGTG 1 cut(s) 571
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 100, 270
CviAII CATG 4 cut(s) 229, 410, 419, 679
CviQI GTAC 2 cut(s) 100, 270
DdeI CTNAG 4 cut(s) 16, 309, 489, 501
DpnI GATC 5 cut(s) 262, 487, 513, 625, 859
DpnII GATC 5 cut(s) 260, 485, 511, 623, 857
EaeI YGGCCR 1 cut(s) 586
EciI GGCGGA 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 137
Eco81I CCTNAGG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 4 cut(s) 232, 413, 422, 682
FaqI GGGAC 1 cut(s) 289
FatI CATG 4 cut(s) 228, 409, 418, 678
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 5 cut(s) 294, 532, 702, 912, 926
FokI GGATG 3 cut(s) 255, 802, 917
Fsp4HI GCNGC 5 cut(s) 294, 532, 702, 912, 926
FspBI CTAG 4 cut(s) 129, 147, 210, 729
GluI GCNGC 5 cut(s) 294, 532, 702, 912, 926
GsaI CCCAGC 1 cut(s) 635
HaeIII GGCC 2 cut(s) 336, 588
HapII CCGG 1 cut(s) 337
HgaI GACGC 1 cut(s) 845
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 4 cut(s) 232, 413, 422, 682
HincII GTYRAC 2 cut(s) 7, 757
HindII GTYRAC 2 cut(s) 7, 757
HinfI GANTC 8 cut(s) 12, 23, 413, 599, 605, 682, 764, 806
HpaII CCGG 1 cut(s) 337
HphI GGTGA 2 cut(s) 187, 384
Hpy166II GTNNAC 4 cut(s) 7, 215, 404, 757
Hpy188I TCNGA 5 cut(s) 163, 525, 604, 805, 823
Hpy188III TCNNGA 4 cut(s) 456, 509, 641, 855
Hpy8I GTNNAC 4 cut(s) 7, 215, 404, 757
HpyAV CCTTC 4 cut(s) 166, 326, 745, 945
HpyCH4III ACNGT 5 cut(s) 169, 202, 445, 463, 574
HpyCH4IV ACGT 2 cut(s) 91, 158
HpyCH4V TGCA 3 cut(s) 404, 689, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 845
HpyF3I CTNAG 4 cut(s) 16, 309, 489, 501
HpySE526I ACGT 2 cut(s) 91, 158
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 4 cut(s) 232, 413, 422, 682
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 5 cut(s) 260, 485, 511, 623, 857
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 5 cut(s) 305, 543, 713, 912, 923
LweI GCATC 2 cut(s) 544, 857
MaeI CTAG 4 cut(s) 129, 147, 210, 729
MaeII ACGT 2 cut(s) 91, 158
MaeIII GTNAC 4 cut(s) 175, 349, 377, 390
MalI GATC 5 cut(s) 262, 487, 513, 625, 859
MboI GATC 5 cut(s) 260, 485, 511, 623, 857
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 3 cut(s) 636, 663, 705
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 6 cut(s) 143, 318, 621, 621, 685, 708
Mox20I TGGCCA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 396
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 701, 845
NdeI CATATG 1 cut(s) 538
NdeII GATC 5 cut(s) 260, 485, 511, 623, 857
NlaIII CATG 4 cut(s) 232, 413, 422, 682
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 175, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 7 cut(s) 23, 413, 599, 605, 682, 764, 806
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 5 cut(s) 295, 533, 703, 913, 927
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PshAI GACNNNNGTC 2 cut(s) 388, 752
Psp6I CCWGG 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 2 cut(s) 101, 271
RsaNI GTAC 2 cut(s) 100, 270
RseI CAYNNNNRTG 1 cut(s) 423
SatI GCNGC 5 cut(s) 294, 532, 702, 912, 926
Sau3AI GATC 5 cut(s) 260, 485, 511, 623, 857
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 2 cut(s) 544, 857
SfcI CTRYAG 1 cut(s) 909
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
Sse9I AATT 3 cut(s) 636, 663, 705
SsiI CCGC 2 cut(s) 38, 787
SspMI CTAG 4 cut(s) 129, 147, 210, 729
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 5 cut(s) 169, 202, 445, 463, 574
TaiI ACGT 2 cut(s) 94, 161
TaqI TCGA 3 cut(s) 205, 613, 626
TasI AATT 3 cut(s) 636, 663, 705
TfiI GAWTC 7 cut(s) 23, 413, 599, 605, 682, 764, 806
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 175, 390
TseI GCWGC 5 cut(s) 293, 531, 701, 911, 925
Tsp45I GTSAC 2 cut(s) 175, 390
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 1 cut(s) 11
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 4 cut(s) 129, 147, 210, 729
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.