Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

33395207 .. 33397419

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAAGAAAGAATGCATCCCTTTAATCAGGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATCATAAAGCCTGAGCGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCTGATGATGAAAATAGGAAGATGGAGATTATCCCAAGACAGTATACTGCTGAATGGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

77

Amino Acids

9.16

Weight (kDa)

6.58

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	117
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	121
BssNAI	GTATAC	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	41, 221
BstDEI	CTNAG	3 cut(s)	48, 68, 117
BstF5I	GGATG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	4 cut(s)	33, 103, 115, 155
CviKI_1	RGCY	4 cut(s)	33, 103, 115, 155
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	48, 68, 117
Eam1104I	CTCTTC	2 cut(s)	41, 221
EarI	CTCTTC	2 cut(s)	41, 221
EcoO109I	RGGNCCY	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	18
FaiI	YATR	3 cut(s)	110, 143, 213
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	16, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	48, 68, 117
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	14, 129
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	81
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	17, 28, 199
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	2 cut(s)	24, 129
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	24, 129
SatI	GCNGC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	4 cut(s)	41, 93, 128, 216
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	210
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	24, 129
Tru9I	TTAA	2 cut(s)	24, 129
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	165, 192
XapI	RAATTY	1 cut(s)	72
XbaI	TCTAGA	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.