Rh7BG399900

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
44385416 .. 44386730
1315 bp
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UTR
Exon/CDS
Intron
Rh7BG399900.1

Sequence Viewer

Length: 744 bp
ATGGTTCGAGATGCACACGGGCGTAAAATGTCAAAGGGCTTGGGCAATGTCATTGACCCTGTTGACATAATAAATGGTATCACCCTAGAACGTCTACATGATAGACTTTTAGAGGGAAATCTGGACCCCAAGGAATTAGATAAGGCCAGAGAGGGGCAATTAAAGGACTTCCCTGATGGTATTCCTGAGTGTGGTGCGGATGCTCTGCGGTTTTCTCTTATCTCGTACACTGCTCAGTCCGATAAGATAAATCTGGATATCCAAAGGGTTGTGGGTTACCGTCAGTGGTGTAACAAACTTTGGAATGCAGTACGATTTGCTTTGGGTATACTTGGGGATGATTATGTTCCGCCCTCAAATGTAAATCCAGATGTGTTGCCATTCAGTTGCCGATGGATTCTCTCAGTGCTAAATGAAGCCATATCCAAAACTGTTATGTCATTGGAATCATACGAGTTCTCAGATGCAGCAACTGCTGTTTATGCTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGAGACTATCAAACCTTACTTTTCTGGCAATGATCCAAAGTTTGCAACAGAGAGGGGTTTTGCACGGGACACTCTATGGGTATGTCTTGACAATGGCCTGAGGTTACTTCATGCCGTATGTGACAGAAGAACTGTGGCAACGTCTGCCGTCACCAGGGGATTACAAAAGGGCATCATCAATTATGATGAGCGAGTACCCATTGATCATAGAGAGCTGGAAAAATGA

Protein Analysis

247

Amino Acids

28.02

Weight (kDa)

5.47

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 1 - 85 4e-11 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 131 - 211 1.1e-15 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 94, 328
AciI CCGC 3 cut(s) 197, 208, 350
AclWI GGATC 1 cut(s) 545
AfaI GTAC 4 cut(s) 227, 312, 497, 714
AfiI CCNNNNNNNGG 3 cut(s) 153, 191, 672
AjnI CCWGG 1 cut(s) 671
AluBI AGCT 2 cut(s) 502, 733
AluI AGCT 2 cut(s) 502, 733
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 2 cut(s) 144, 613
ApeKI GCWGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 73, 661
AvaII GGWCC 1 cut(s) 124
AxyI CCTNAGG 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 479
BccI CCATC 2 cut(s) 170, 387
BceAI ACGGC 2 cut(s) 617, 650
BciT130I CCWGG 1 cut(s) 673
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 673
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 673
BmsI GCATC 3 cut(s) 190, 454, 699
BpiI GAAGAC 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 129, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 191, 672
Bse21I CCTNAGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 52, 553
BseBI CCWGG 1 cut(s) 673
BseDI CCNNGG 2 cut(s) 129, 672
BseGI GGATG 2 cut(s) 205, 343
BseLI CCNNNNNNNGG 3 cut(s) 153, 191, 672
BseMI GCAATG 2 cut(s) 52, 553
BseMII CTCAG 5 cut(s) 177, 248, 417, 474, 608
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 2 cut(s) 146, 615
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 3 cut(s) 153, 191, 672
BsmAI GTCTC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 146, 615
Bsp143I GATC 2 cut(s) 550, 721
BspACI CCGC 3 cut(s) 197, 208, 350
BspANI GGCC 2 cut(s) 146, 615
BspCNI CTCAG 5 cut(s) 178, 247, 416, 473, 609
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 52, 553
BssECI CCNNGG 2 cut(s) 129, 672
BssMI GATC 2 cut(s) 550, 721
BssNAI GTATAC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 3 cut(s) 281, 433, 652
BstAPI GCANNNNNTGC 2 cut(s) 473, 662
BstDEI CTNAG 5 cut(s) 186, 234, 403, 460, 617
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 2 cut(s) 205, 343
BstKTI GATC 2 cut(s) 553, 724
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 550, 721
BstMWI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 662
BstNI CCWGG 1 cut(s) 673
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 671
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 505
BstZ17I GTATAC 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 617
BsuRI GGCC 2 cut(s) 146, 615
BtsCI GGATG 2 cut(s) 205, 343
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 290, 411
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 4 cut(s) 226, 311, 496, 713
CviAII CATG 2 cut(s) 98, 629
CviJI RGCY 6 cut(s) 39, 146, 419, 502, 615, 733
CviKI_1 RGCY 6 cut(s) 39, 146, 419, 502, 615, 733
CviQI GTAC 4 cut(s) 226, 311, 496, 713
DdeI CTNAG 5 cut(s) 186, 234, 403, 460, 617
DpnI GATC 2 cut(s) 552, 723
DpnII GATC 2 cut(s) 550, 721
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 617
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 671
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 101, 632
FaqI GGGAC 1 cut(s) 599
FatI CATG 2 cut(s) 97, 628
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 2 cut(s) 94, 328
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 2 cut(s) 212, 350
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 146, 615
Hin1II CATG 2 cut(s) 101, 632
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 397, 446
HphI GGTGA 2 cut(s) 73, 661
Hpy166II GTNNAC 4 cut(s) 64, 95, 228, 329
Hpy188I TCNGA 2 cut(s) 241, 463
Hpy188III TCNNGA 6 cut(s) 8, 122, 185, 254, 368, 605
Hpy8I GTNNAC 4 cut(s) 64, 95, 228, 329
HpyCH4III ACNGT 3 cut(s) 281, 433, 652
HpyCH4IV ACGT 2 cut(s) 91, 659
HpyCH4V TGCA 5 cut(s) 14, 308, 467, 563, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 662
HpyF3I CTNAG 5 cut(s) 186, 234, 403, 460, 617
HpySE526I ACGT 2 cut(s) 91, 659
Hsp92II CATG 2 cut(s) 101, 632
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 2 cut(s) 550, 721
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 3 cut(s) 190, 454, 699
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 91, 659
MaeIII GTNAC 5 cut(s) 275, 290, 621, 638, 667
MalI GATC 2 cut(s) 552, 723
MboI GATC 2 cut(s) 550, 721
MboII GAAGA 2 cut(s) 505, 657
MluCI AATT 3 cut(s) 134, 158, 697
MnlI CCTC 5 cut(s) 106, 145, 364, 564, 612
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 673
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 673
MwoI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 662
NdeII GATC 2 cut(s) 550, 721
NlaIII CATG 2 cut(s) 101, 632
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 638, 667
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 397, 446
PkrI GCNGC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 671
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 4 cut(s) 227, 312, 497, 714
RsaNI GTAC 4 cut(s) 226, 311, 496, 713
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 550, 721
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 673
SetI ASST 6 cut(s) 94, 504, 535, 623, 662, 735
SfaNI GCATC 3 cut(s) 190, 454, 699
SinI GGWCC 1 cut(s) 124
Sse9I AATT 3 cut(s) 134, 158, 697
SsiI CCGC 3 cut(s) 197, 208, 350
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 671
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 281, 433, 652
TaiI ACGT 2 cut(s) 94, 662
TaqI TCGA 1 cut(s) 7
TasI AATT 3 cut(s) 134, 158, 697
TfiI GAWTC 2 cut(s) 397, 446
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 3 cut(s) 235, 290, 411
TseFI GTSAC 2 cut(s) 638, 667
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 638, 667
TspDTI ATGAA 3 cut(s) 429, 505, 617
TspRI CASTG 3 cut(s) 235, 290, 411
VpaK11BI GGWCC 1 cut(s) 124
XmiI GTMKAC 2 cut(s) 94, 328
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.