RchiOBHm_Chr7g0232281

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
56255685 .. 56260838
5154 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20819

Sequence Viewer

Length: 207 bp
ATGATCGAGAACCCTGTTGAATTTGGGGTTATGACTTTATTTGCATATCATGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCCACTACCGGAATAGGGACGATGCTCGGTGATACAGCTATCGTAGTGCATCCTGATGACGAAATATATAAGCATCTTCATGGAAACATGCAATCCATCCATTTAATGGAAGAAAGATTCCTATAA

Protein Analysis

68

Amino Acids

7.66

Weight (kDa)

4.46

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AcsI RAATTY 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 96, 187
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
ApoI RAATTY 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 80, 122
BccI CCATC 1 cut(s) 185
BmsI GCATC 3 cut(s) 93, 139, 163
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 187
BseGI GGATG 2 cut(s) 130, 177
BseLI CCNNNNNNNGG 2 cut(s) 96, 187
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 96, 187
BsmFI GGGAC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 3
BssMI GATC 1 cut(s) 3
BstF5I GGATG 2 cut(s) 130, 177
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 172
BtsCI GGATG 2 cut(s) 130, 177
CviAII CATG 3 cut(s) 50, 161, 169
CviJI RGCY 2 cut(s) 83, 119
CviKI_1 RGCY 2 cut(s) 83, 119
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaeI CATG 3 cut(s) 53, 164, 172
FaiI YATR 8 cut(s) 32, 46, 51, 148, 150, 162, 170, 205
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 49, 160, 168
FokI GGATG 2 cut(s) 117, 164
HapII CCGG 1 cut(s) 90
Hin1II CATG 3 cut(s) 53, 164, 172
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 80, 122
Hpy188III TCNNGA 2 cut(s) 7, 134
HpyCH4V TGCA 3 cut(s) 44, 130, 172
Hsp92II CATG 3 cut(s) 53, 164, 172
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 27, 103, 147
LweI GCATC 3 cut(s) 93, 139, 163
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 68, 71, 149, 203
MluCI AATT 1 cut(s) 20
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 135, 159
MspI CCGG 1 cut(s) 90
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 53, 164, 172
NspI RCATGY 1 cut(s) 172
PfeI GAWTC 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 135, 159
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 3
SetI ASST 2 cut(s) 70, 121
SfaNI GCATC 3 cut(s) 93, 139, 163
SgeI CNNG 8 cut(s) 19, 26, 62, 102, 119, 146, 173, 181
SmiMI CAYNNNNRTG 2 cut(s) 135, 159
Sse9I AATT 1 cut(s) 20
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 20
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.