MD03G1000400.v1.1

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
21801 .. 21989
189 bp
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UTR
Exon/CDS
Intron
MD03G1000400.v1.1.491

Sequence Viewer

Length: 189 bp
ATGTTAACTTCATTTGCTTATACTCTAGAGGAAGACTTTGGTGAGATTATGGTGGCCACCACTAGAGTGGAAACTATGCTCGGTGATACTGCCATTATTGTACATCCTAATGACGAGAGGTATAGACAACATGCCATCCATCCTTTCAATCCATCCTTTCAATGGAAGAAGAATTCCTATAATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.26

Weight (kDa)

5.4

Isoelectric Point (pI)

18.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 148, 161
AleI CACNNNNGTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 53, 95
BalI TGGCCA 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 39
BccI CCATC 3 cut(s) 143, 147, 160
BfaI CTAG 2 cut(s) 26, 63
BpiI GAAGAC 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 162
BseGI GGATG 4 cut(s) 103, 135, 139, 152
BseLI CCNNNNNNNGG 1 cut(s) 162
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 162
BsnI GGCC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 100
BspANI GGCC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 186
BstF5I GGATG 4 cut(s) 103, 135, 139, 152
BstNSI RCATGY 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 4 cut(s) 103, 135, 139, 152
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 131
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
CviQI GTAC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 21, 50, 77, 123, 132, 180
FatI CATG 1 cut(s) 130
FokI GGATG 4 cut(s) 90, 122, 126, 139
FspBI CTAG 2 cut(s) 26, 63
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 2 cut(s) 53, 95
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 134
KspAI GTTAAC 1 cut(s) 6
MaeI CTAG 2 cut(s) 26, 63
MaeII ACGT 1 cut(s) 185
MboII GAAGA 3 cut(s) 44, 178, 181
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 2 cut(s) 22, 111
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 65, 108
Msp20I TGGCCA 1 cut(s) 56
NlaIII CATG 1 cut(s) 134
NspI RCATGY 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 186
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 65, 108
SaqAI TTAA 1 cut(s) 5
SetI ASST 2 cut(s) 122, 188
SgeI CNNG 5 cut(s) 38, 75, 92, 127, 143
SmiMI CAYNNNNRTG 2 cut(s) 65, 108
Sse9I AATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 26, 63
TaiI ACGT 1 cut(s) 188
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
XapI RAATTY 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 159
XspI CTAG 2 cut(s) 26, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.