Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8371739.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1007

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8371739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 259 bp

gacacctccaaagttatgttacaccacaaagattcgtgatgcacatccgcttaaaatgtccaagtccttggggaatgtcattgatcctcttgatgtgatcaatggtatttcgctggaagatctacacaagaagctttcagagggaaatttggagccgagggaaatagctatagccaaagaaggccaaaaaaaaaaggattttcctaatggtattgctgaatgtggttctgatgcgctacattttgctccgataccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

85

Amino Acids

9.27

Weight (kDa)

6.75

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	146
AluBI	AGCT	2 cut(s)	134, 168
AluI	AGCT	2 cut(s)	134, 168
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	169
BglII	AGATCT	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	29, 221
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	67, 156
Bse8I	GATNNNNATC	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	67, 156
BseGI	GGATG	1 cut(s)	44
BseJI	GATNNNNATC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	83, 97, 119
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	67, 156
BssMI	GATC	3 cut(s)	83, 97, 119
BssT1I	CCWWGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	86, 100, 122
BstMBI	GATC	3 cut(s)	83, 97, 119
BstSFI	CTRYAG	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	236
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	5 cut(s)	134, 155, 168, 174, 184
CviKI_1	RGCY	5 cut(s)	134, 155, 168, 174, 184
DpnI	GATC	3 cut(s)	85, 99, 121
DpnII	GATC	3 cut(s)	83, 97, 119
Eco130I	CCWWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	17, 171, 257
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	97
FokI	GGATG	1 cut(s)	31
GlaI	GCGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	140, 230, 250
Hpy188III	TCNNGA	2 cut(s)	36, 90
HpyAV	CCTTC	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	83, 97, 119
LmnI	GCTCC	2 cut(s)	152, 251
LpnPI	CCDG	1 cut(s)	99
LweI	GCATC	2 cut(s)	29, 221
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	3 cut(s)	85, 99, 121
MboI	GATC	3 cut(s)	83, 97, 119
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	119
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	4 cut(s)	16, 97, 134, 151
MseI	TTAA	1 cut(s)	52
NdeII	GATC	3 cut(s)	83, 97, 119
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	83, 97, 119
SetI	ASST	3 cut(s)	8, 136, 170
SfaNI	GCATC	2 cut(s)	29, 221
SfcI	CTRYAG	1 cut(s)	169
SgeI	CNNG	7 cut(s)	48, 74, 80, 102, 126, 140, 169
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	67
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	52
Tru9I	TTAA	1 cut(s)	52
XapI	RAATTY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.