Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

58582578 .. 58591137

Gene Structure 8560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG445900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCTCACCTGATGCAACTGCAAGGGATAATCGCATAGTGAACTGGGAATGTGTGTTGCGGACTGCAATATCTGATATTGAGGTGGATCCTCCAATTGAAACAAAAGAAAGGACACTACTAGAAGTTTCTGGATATGATCGAGAACCCTCATCTTCATGGAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAAAAGATGAAATTCTTGTTGATCCAGAGTTTGGAACTGGTGCTGTCAAGATTACCCAGACCCATGCTCCTAATGACTTTATGGTCGGGAAGCACCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGGAAGATAAACCAGTATGGGGGAGCATTTGAAGGGATTCCACCCTTCAGAGCCCGAGAGGCTGTGACTGATGCATTAAAGAAGAAGGGCCTCTTCAAAGAAACTAGGATCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAATGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCCGATGATGAAAATAGGAAGCTGGAGATTATCCCTAGACAGTATACTGCTGGTTGGAAAGGTGCTCATTTTTTCCTTATTGTGCTGTATGAAATTTCTAGTTTATATGCATTGCCAAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

233

Amino Acids

26.55

Weight (kDa)

6.33

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	7 - 208	3.1e-08	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccB7I	CCANNNNNTGG	2 cut(s)	185, 236
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	4 cut(s)	83, 96, 221, 452
AcsI	RAATTY	3 cut(s)	216, 480, 669
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	185, 236, 355
AgsI	TTSAA	3 cut(s)	101, 368, 433
AluBI	AGCT	2 cut(s)	563, 598
AluI	AGCT	2 cut(s)	563, 598
Alw21I	GWGCWC	1 cut(s)	643
AlwI	GGATC	4 cut(s)	83, 96, 221, 452
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	3, 424
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	3 cut(s)	216, 480, 669
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	2 cut(s)	183, 329
BfaI	CTAG	5 cut(s)	122, 441, 489, 612, 675
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	90, 510
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	4, 397
BmuI	ACTGGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 236, 355
Bse1I	ACTGG	3 cut(s)	50, 247, 349
Bse3DI	GCAATG	1 cut(s)	686
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	3 cut(s)	185, 236, 355
BseMI	GCAATG	1 cut(s)	686
BseNI	ACTGG	3 cut(s)	50, 247, 349
BseXI	GCAGC	1 cut(s)	555
BshFI	GGCC	2 cut(s)	5, 426
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	185, 236, 355
BsnI	GGCC	2 cut(s)	5, 426
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	391, 643
Bsp143I	GATC	4 cut(s)	88, 139, 226, 444
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	5, 426
BspLI	GGNNCC	2 cut(s)	90, 510
BspPI	GGATC	4 cut(s)	83, 96, 221, 452
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	50, 247, 349
BssMI	GATC	4 cut(s)	88, 139, 226, 444
BssNAI	GTATAC	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	618
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	456, 476
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	91, 142, 229, 447
BstMBI	GATC	4 cut(s)	88, 139, 226, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 569
BstNSI	RCATGY	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	5, 426
BtsCI	GGATG	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	3 cut(s)	159, 167, 269
CviJI	RGCY	8 cut(s)	5, 389, 398, 426, 511, 523, 563, 598
CviKI_1	RGCY	8 cut(s)	5, 389, 398, 426, 511, 523, 563, 598
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	2 cut(s)	456, 476
DpnI	GATC	4 cut(s)	90, 141, 228, 446
DpnII	GATC	4 cut(s)	88, 139, 226, 444
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	424
EcoT22I	ATGCAT	2 cut(s)	412, 688
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	3 cut(s)	162, 170, 272
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	3 cut(s)	158, 166, 268
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	5 cut(s)	122, 441, 489, 612, 675
GluI	GCNGC	1 cut(s)	544
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	5, 426
Hin1II	CATG	3 cut(s)	162, 170, 272
HinfI	GANTC	2 cut(s)	196, 373
Hpy166II	GTNNAC	2 cut(s)	43, 621
Hpy188I	TCNGA	2 cut(s)	76, 386
Hpy188III	TCNNGA	7 cut(s)	132, 143, 230, 253, 292, 308, 489
Hpy8I	GTNNAC	2 cut(s)	43, 621
HpyAV	CCTTC	4 cut(s)	186, 362, 391, 415
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4V	TGCA	7 cut(s)	17, 23, 68, 170, 410, 543, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 569
HpyF3I	CTNAG	2 cut(s)	456, 476
Hsp92II	CATG	3 cut(s)	162, 170, 272
Kzo9I	GATC	4 cut(s)	88, 139, 226, 444
LmnI	GCTCC	3 cut(s)	277, 359, 508
LpnPI	CCDG	9 cut(s)	24, 31, 117, 228, 243, 275, 362, 584, 612
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	4, 397
MaeI	CTAG	5 cut(s)	122, 441, 489, 612, 675
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	4 cut(s)	90, 141, 228, 446
MboI	GATC	4 cut(s)	88, 139, 226, 444
MboII	GAAGA	5 cut(s)	147, 201, 352, 421, 430
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	391, 643
MluCI	AATT	4 cut(s)	96, 216, 480, 669
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	6 cut(s)	16, 76, 102, 160, 388, 437
Mph1103I	ATGCAT	2 cut(s)	412, 688
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	183, 413, 537
MslI	CAYNNNNRTG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	395, 569
NdeII	GATC	4 cut(s)	88, 139, 226, 444
NlaIII	CATG	3 cut(s)	162, 170, 272
NlaIV	GGNNCC	2 cut(s)	90, 510
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	2 cut(s)	412, 688
NspI	RCATGY	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	196, 373
PflMI	CCANNNNNTGG	2 cut(s)	185, 236
PkrI	GCNGC	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	90, 510
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	183, 413, 537
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	4 cut(s)	88, 139, 226, 444
Sau96I	GGNCC	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	391, 643
SetI	ASST	5 cut(s)	13, 87, 565, 600, 640
SfaNI	GCATC	2 cut(s)	4, 397
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	4 cut(s)	96, 216, 480, 669
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	5 cut(s)	122, 441, 489, 612, 675
TaaI	ACNGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	142
TasI	AATT	4 cut(s)	96, 216, 480, 669
TfiI	GAWTC	2 cut(s)	196, 373
Tru1I	TTAA	3 cut(s)	183, 413, 537
Tru9I	TTAA	3 cut(s)	183, 413, 537
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	147, 228, 573, 600, 681
Van91I	CCANNNNNTGG	2 cut(s)	185, 236
XapI	RAATTY	3 cut(s)	216, 480, 669
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	122, 441, 489, 612, 675
Zsp2I	ATGCAT	2 cut(s)	412, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.