Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

72746238 .. 72747721

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTCGGTGATACTGCTATCGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCACGGTAAACATGCAATCCATCCATTTAATGGAAGAAAGATTCCTATAATAAGTGATGAAATTCTTGTTGATCCAGAGTTTGGGACTGGTGCTGTCAAGGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAGCGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTTAATGCTGTCGCTGATGATGAAAATAGGAAGCTGGAGATTATCCCAAGACAGTATACTGCTGAATGGAAGAGGGGATATTTACTCAAAAAATGGAAATGTGAACATGTTTACTTGTTTACTTGTTTTGCTATCTGTAATCACAGATGGCTTCATAACATTAGTGATTGGTGTGTCTCGAGGCAACTTTGGTGGAGTCACCGTGTTCTGGCACGGTATGTTGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

170

Amino Acids

20.0

Weight (kDa)

8.82

Isoelectric Point (pI)

20.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 137
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	117, 198
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	86, 137, 490
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	281, 316
AluI	AGCT	2 cut(s)	281, 316
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	117, 198
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	20, 473
AvaI	CYCGRG	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	84, 423
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	37, 61
BpmI	CTGGAG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 137, 490
Bse1I	ACTGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	28, 76
BseLI	CCNNNNNNNGG	3 cut(s)	86, 137, 490
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	86, 137, 490
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	127
BssNAI	GTATAC	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	62, 336, 485, 498
Bst6I	CTCTTC	2 cut(s)	167, 347
BstDEI	CTNAG	2 cut(s)	174, 194
BstF5I	GGATG	2 cut(s)	28, 76
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	71, 392
BstV1I	GCAGC	1 cut(s)	273
BstZ17I	GTATAC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	28, 76
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	455, 490
CviAII	CATG	2 cut(s)	68, 389
CviJI	RGCY	6 cut(s)	159, 229, 241, 281, 316, 433
CviKI_1	RGCY	6 cut(s)	159, 229, 241, 281, 316, 433
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	174, 194
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	167, 347
EarI	CTCTTC	2 cut(s)	167, 347
Eco88I	CYCGRG	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	157
FaeI	CATG	2 cut(s)	71, 392
FaiI	YATR	9 cut(s)	48, 69, 104, 233, 269, 339, 390, 438, 501
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	67, 388
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	15, 63
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	71, 392
HinfI	GANTC	2 cut(s)	97, 478
HphI	GGTGA	2 cut(s)	20, 473
Hpy166II	GTNNAC	5 cut(s)	65, 339, 386, 394, 402
Hpy188III	TCNNGA	4 cut(s)	32, 131, 207, 460
Hpy8I	GTNNAC	5 cut(s)	65, 339, 386, 394, 402
HpyCH4III	ACNGT	4 cut(s)	62, 336, 485, 498
HpyCH4V	TGCA	3 cut(s)	28, 71, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	174, 194
Hsp92II	CATG	2 cut(s)	71, 392
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	45, 129, 144, 257, 302, 476
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	37, 61
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	4 cut(s)	47, 102, 154, 364
MluCI	AATT	2 cut(s)	117, 198
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	3 cut(s)	170, 348, 456
MseI	TTAA	3 cut(s)	84, 255, 285
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	71, 392
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	2 cut(s)	71, 392
PaeR7I	CTCGAG	1 cut(s)	460
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	2 cut(s)	86, 137
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PscI	ACATGT	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	84, 255, 285
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	487
SetI	ASST	2 cut(s)	283, 318
SfaNI	GCATC	2 cut(s)	37, 61
Sfr274I	CTCGAG	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	2 cut(s)	117, 198
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	4 cut(s)	62, 336, 485, 498
TaqI	TCGA	1 cut(s)	461
TasI	AATT	2 cut(s)	117, 198
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	84, 255, 285
Tru9I	TTAA	3 cut(s)	84, 255, 285
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	129, 291, 318, 425
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	2 cut(s)	86, 137
XapI	RAATTY	2 cut(s)	117, 198
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	2 cut(s)	71, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.