Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

24053940 .. 24055127

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTGGGAGCTACTTTAGGGTTTTAGCGAAGCGGCAGAGTTTTATCGGCAACCAGATCAAAGCTGCACCTTATCTCCTCCGTCGTCTCCGTTCTCCGCCGGCAAACCTGGAAGCAAGAGAGAAAGAGTTGAAGAAGCAAAAAGCGTTAGGGAAAGCTGCCAAGTTCCAGGCACAACAAGCGAATGCGGCTTCGAAGAAGAATGTGAAGTGTGGAAATAAGGAGGACGAAAATGCAGCTGATTTTGTTGATCCTCCAACTCCGGTTGGCGAGAAGAAGCAGCTTTTTAAGCTGATGGCCAAACAGTACAGTACAGATGCCGTGGAGAAACAGTGGTATCCGTGGTGGGAGAAATCAGGGTGCTTTAAAGAAAATGCTAAGAGCTCCAAACCTCCTTATGTGATTGACACAATGATTCGTTGGCGAAGAATGTCAGGATACAATGCCTTGTTGGTGCCTGCTGGAATGGACCATGCTGGGATTGCAACTCAGGTTCATGGAGGAATTTGTACTTGGTTAAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

177

Amino Acids

19.94

Weight (kDa)

9.95

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AciI	CCGC	3 cut(s)	34, 98, 188
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	504
AfaI	GTAC	3 cut(s)	308, 313, 511
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	108, 168
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AluBI	AGCT	7 cut(s)	12, 65, 158, 239, 283, 292, 384
AluI	AGCT	7 cut(s)	12, 65, 158, 239, 283, 292, 384
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	65, 158, 236, 280
ApoI	RAATTY	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	469
BaeI	ACNNNNGTAYC	2 cut(s)	320, 353
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	52, 145, 248, 292
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	110, 170
BciVI	GTATCC	2 cut(s)	348, 431
BcoDI	GTCTC	1 cut(s)	92
BfuI	GTATCC	2 cut(s)	348, 431
BisI	GCNGC	6 cut(s)	35, 66, 159, 189, 237, 281
BlsI	GCNGC	6 cut(s)	36, 67, 160, 190, 238, 282
Bme1390I	CCNGG	2 cut(s)	110, 170
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	2 cut(s)	110, 170
BmsI	GCATC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	321, 341
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 317, 347
Bse118I	RCCGGY	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	110, 170
BseDI	CCNNGG	2 cut(s)	321, 341
BseMII	CTCAG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	52, 145, 248, 292
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	101, 263
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	57, 250
BspACI	CCGC	3 cut(s)	34, 98, 188
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	321, 341
BssMI	GATC	2 cut(s)	57, 250
Bst2UI	CCWGG	2 cut(s)	110, 170
Bst4CI	ACNGT	3 cut(s)	306, 311, 333
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	102, 459
BstDEI	CTNAG	2 cut(s)	378, 489
BstDSI	CCRYGG	2 cut(s)	321, 341
BstKTI	GATC	2 cut(s)	60, 253
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	57, 250
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 188, 289, 482
BstNI	CCWGG	2 cut(s)	110, 170
BstSCI	CCNGG	2 cut(s)	108, 168
BstV1I	GCAGC	4 cut(s)	52, 145, 248, 292
BsuI	GTATCC	2 cut(s)	348, 431
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	2 cut(s)	321, 341
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	102, 459
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	307, 312, 510
CviAII	CATG	2 cut(s)	473, 497
CviJI	RGCY	9 cut(s)	12, 65, 158, 191, 239, 283, 292, 299, 384
CviKI_1	RGCY	9 cut(s)	12, 65, 158, 191, 239, 283, 292, 299, 384
CviQI	GTAC	3 cut(s)	307, 312, 510
DdeI	CTNAG	2 cut(s)	378, 489
DpnI	GATC	2 cut(s)	59, 252
DpnII	GATC	2 cut(s)	57, 250
DraI	TTTAAA	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	108, 168
EcoT38I	GRGCYC	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	476, 500
FaiI	YATR	3 cut(s)	399, 474, 498
FatI	CATG	2 cut(s)	472, 496
Fnu4HI	GCNGC	6 cut(s)	35, 66, 159, 189, 237, 281
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	6 cut(s)	35, 66, 159, 189, 237, 281
GluI	GCNGC	6 cut(s)	35, 66, 159, 189, 237, 281
GsaI	CCCAGC	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	101, 263
Hin1II	CATG	2 cut(s)	476, 500
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	101, 263
Hpy188III	TCNNGA	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	87
HpyCH4III	ACNGT	3 cut(s)	306, 311, 333
HpyCH4V	TGCA	3 cut(s)	68, 236, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 188, 289, 482
HpyF3I	CTNAG	2 cut(s)	378, 489
Hsp92II	CATG	2 cut(s)	476, 500
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	57, 250
LmnI	GCTCC	2 cut(s)	9, 389
Lsp1109I	GCAGC	4 cut(s)	52, 145, 248, 292
LweI	GCATC	1 cut(s)	307
MalI	GATC	2 cut(s)	59, 252
MboI	GATC	2 cut(s)	57, 250
MboII	GAAGA	5 cut(s)	145, 208, 211, 286, 438
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	1 cut(s)	504
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	89, 217, 264, 402, 494
Mox20I	TGGCCA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	3 cut(s)	288, 366, 518
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	2 cut(s)	101, 263
MspR9I	CCNGG	2 cut(s)	110, 170
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	110, 170
MwoI	GCNNNNNNNGC	4 cut(s)	179, 188, 289, 482
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	57, 250
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	476, 500
NlaIV	GGNNCC	1 cut(s)	456
NspV	TTCGAA	1 cut(s)	194
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	6 cut(s)	36, 67, 160, 190, 238, 282
Psp124BI	GAGCTC	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	108, 168
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	2 cut(s)	108, 168
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	308, 313, 511
RsaNI	GTAC	3 cut(s)	307, 312, 510
SacI	GAGCTC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	288, 366, 518
SatI	GCNGC	6 cut(s)	35, 66, 159, 189, 237, 281
Sau3AI	GATC	2 cut(s)	57, 250
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	110, 170
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	3 cut(s)	34, 98, 188
SstI	GAGCTC	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	108, 168
TaaI	ACNGT	3 cut(s)	306, 311, 333
TaqI	TCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	504
TatI	WGTACW	3 cut(s)	306, 311, 509
TauI	GCSGC	2 cut(s)	37, 191
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	288, 366, 518
Tru9I	TTAA	3 cut(s)	288, 366, 518
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	4 cut(s)	65, 158, 236, 280
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	3 cut(s)	71, 80, 330
TspRI	CASTG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.