RchiOBHm_Chr2g0151761

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
69321162 .. 69321568
407 bp
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UTR
Exon/CDS
Intron
PRQ52093

Sequence Viewer

Length: 309 bp
ATGCTCGGTGATACTGCTATCGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCATGGTAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAAGTGACGAAATTCTTGTTGATCCAGAGTTTGGGACTAGTGCTGTCAAGATTACCCCAGCCCATGATCCTAATGACTTTATGGTTGGGAAGCACCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGAGCATTTGACAGGGATGCCACGCTTCAAAATCCGAGAGGCTGTGACTGA

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

5.65

Isoelectric Point (pI)

18.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1_2 PF13603 19 - 97 1.1e-08 Leucyl-tRNA synthetase, editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 86, 137
AclWI GGATC 2 cut(s) 122, 167
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 86, 137, 256
AgsI TTSAA 1 cut(s) 287
AhlI ACTAGT 1 cut(s) 143
AlwI GGATC 2 cut(s) 122, 167
ApoI RAATTY 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 20
BccI CCATC 2 cut(s) 84, 230
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 1 cut(s) 144
BmsI GCATC 3 cut(s) 37, 61, 265
BpuEI CTTGAG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 137, 256
Bse1I ACTGG 1 cut(s) 250
BseGI GGATG 3 cut(s) 28, 76, 280
BseLI CCNNNNNNNGG 3 cut(s) 86, 137, 256
BseNI ACTGG 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 86, 137, 256
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 127, 172
BspPI GGATC 2 cut(s) 122, 167
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 127, 172
BstF5I GGATG 3 cut(s) 28, 76, 280
BstKTI GATC 2 cut(s) 130, 175
BstMBI GATC 2 cut(s) 127, 172
BstNSI RCATGY 1 cut(s) 71
BtsCI GGATG 3 cut(s) 28, 76, 280
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
CviAII CATG 3 cut(s) 59, 68, 170
CviJI RGCY 2 cut(s) 167, 300
CviKI_1 RGCY 2 cut(s) 167, 300
DpnI GATC 2 cut(s) 129, 174
DpnII GATC 2 cut(s) 127, 172
FaeI CATG 3 cut(s) 62, 71, 173
FaiI YATR 8 cut(s) 48, 60, 69, 104, 171, 188, 204, 255
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 58, 67, 169
FokI GGATG 3 cut(s) 15, 63, 287
FspBI CTAG 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 62, 71, 173
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 4 cut(s) 32, 131, 154, 209
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 28, 71
Hsp92II CATG 3 cut(s) 62, 71, 173
Kzo9I GATC 2 cut(s) 127, 172
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 5 cut(s) 45, 144, 177, 256, 263
LweI GCATC 3 cut(s) 37, 61, 265
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 110, 302
MalI GATC 2 cut(s) 129, 174
MboI GATC 2 cut(s) 127, 172
MboII GAAGA 2 cut(s) 47, 102
MluCI AATT 1 cut(s) 117
MnlI CCTC 1 cut(s) 290
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 33, 57
NdeII GATC 2 cut(s) 127, 172
NlaIII CATG 3 cut(s) 62, 71, 173
NmuCI GTSAC 2 cut(s) 110, 302
NspI RCATGY 1 cut(s) 71
PfeI GAWTC 1 cut(s) 97
PflMI CCANNNNNTGG 2 cut(s) 86, 137
PspFI CCCAGC 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 33, 57
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 127, 172
SfaNI GCATC 3 cut(s) 37, 61, 265
SmiMI CAYNNNNRTG 2 cut(s) 33, 57
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 144
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 110, 302
Tsp45I GTSAC 2 cut(s) 110, 302
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 2 cut(s) 86, 137
XapI RAATTY 1 cut(s) 117
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.