Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

9823111 .. 9823902

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGCCATGGGTCGACTGCAGTGTTGACCCGTATTTCTCCTCACCCTTCACTACTAGTACTAGTACTACTTTCTTTGGCAGGAATGAAGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTTTGTTCCCCATGCCCGGTGAGGACATCCTTGGCAACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTCGGACGGCTACGACGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACCCATCCGGAGCTGGTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

263

Amino Acids

28.26

Weight (kDa)

4.51

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	2.5e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	770
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
AfaI	GTAC	4 cut(s)	91, 328, 541, 547
AfiI	CCNNNNNNNGG	3 cut(s)	329, 413, 641
AgsI	TTSAA	1 cut(s)	617
AhlI	ACTAGT	4 cut(s)	314, 443, 536, 542
AjnI	CCWGG	2 cut(s)	322, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	5 cut(s)	7, 199, 410, 754, 776
AluI	AGCT	5 cut(s)	7, 199, 410, 754, 776
Alw21I	GWGCWC	2 cut(s)	177, 756
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	770
AoxI	GGCC	2 cut(s)	404, 485
ApeKI	GCWGC	2 cut(s)	50, 293
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 416, 448
Asp700I	GAANNNNTTC	2 cut(s)	316, 621
AspS9I	GGNCC	4 cut(s)	357, 404, 438, 485
AsuC2I	CCSGG	2 cut(s)	55, 642
AsuHPI	GGTGA	4 cut(s)	516, 596, 656, 791
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	357, 438
BaeGI	GKGCMC	2 cut(s)	164, 306
BamHI	GGATCC	4 cut(s)	335, 383, 416, 464
BanII	GRGCYC	2 cut(s)	262, 756
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	177, 756
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	3 cut(s)	90, 395, 775
BceAI	ACGGC	2 cut(s)	72, 736
BciT130I	CCWGG	2 cut(s)	324, 608
BcnI	CCSGG	2 cut(s)	55, 642
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	4 cut(s)	314, 443, 536, 542
BfaI	CTAG	4 cut(s)	315, 444, 537, 543
BfmI	CTRYAG	2 cut(s)	168, 499
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 691
BlpI	GCTNAGC	1 cut(s)	755
BlsI	GCNGC	3 cut(s)	52, 295, 692
BmcAI	AGTACT	2 cut(s)	541, 547
Bme1390I	CCNGG	4 cut(s)	55, 324, 608, 642
Bme18I	GGWCC	2 cut(s)	357, 438
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	357, 404, 438, 485
BmiI	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
BmrFI	CCNGG	4 cut(s)	55, 324, 608, 642
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	3 cut(s)	113, 282, 770
BpuMI	CCSGG	2 cut(s)	55, 642
BsaJI	CCNNGG	5 cut(s)	306, 488, 582, 655, 678
BsaWI	WCCGGW	2 cut(s)	707, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 413, 641
Bse1I	ACTGG	5 cut(s)	205, 334, 367, 376, 457
BseAI	TCCGGA	1 cut(s)	770
BseBI	CCWGG	2 cut(s)	324, 608
BseDI	CCNNGG	5 cut(s)	306, 488, 582, 655, 678
BseGI	GGATG	3 cut(s)	37, 651, 767
BseLI	CCNNNNNNNGG	3 cut(s)	329, 413, 641
BseMII	CTCAG	1 cut(s)	769
BseNI	ACTGG	5 cut(s)	205, 334, 367, 376, 457
BseRI	GAGGAG	2 cut(s)	511, 609
BseSI	GKGCMC	2 cut(s)	164, 306
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	406, 487
BsiHKAI	GWGCWC	2 cut(s)	177, 756
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	4 cut(s)	54, 642, 708, 771
BslI	CCNNNNNNNGG	3 cut(s)	329, 413, 641
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	406, 487
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	164, 177, 262, 306, 756
Bsp13I	TCCGGA	1 cut(s)	770
Bsp1720I	GCTNAGC	1 cut(s)	755
Bsp19I	CCATGG	3 cut(s)	306, 488, 582
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	2 cut(s)	406, 487
BspCNI	CTCAG	1 cut(s)	768
BspEI	TCCGGA	1 cut(s)	770
BspLI	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	9 cut(s)	141, 330, 343, 378, 391, 411, 424, 459, 472
BsrI	ACTGG	5 cut(s)	205, 334, 367, 376, 457
BssECI	CCNNGG	5 cut(s)	306, 488, 582, 655, 678
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	4 cut(s)	306, 488, 582, 655
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	324, 608
Bst4CI	ACNGT	1 cut(s)	731
Bst6I	CTCTTC	2 cut(s)	272, 627
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	755, 789
BstDSI	CCRYGG	3 cut(s)	306, 488, 582
BstF5I	GGATG	3 cut(s)	37, 651, 767
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	696, 720
BstNI	CCWGG	2 cut(s)	324, 608
BstSCI	CCNGG	4 cut(s)	53, 322, 606, 640
BstSFI	CTRYAG	2 cut(s)	168, 499
BstSLI	GKGCMC	2 cut(s)	164, 306
BstV1I	GCAGC	2 cut(s)	62, 280
BstX2I	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
BstYI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
BsuRI	GGCC	2 cut(s)	406, 487
BtgI	CCRYGG	3 cut(s)	306, 488, 582
BtsCI	GGATG	3 cut(s)	37, 651, 767
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	360, 508
Cac8I	GCNNGC	1 cut(s)	408
Cfr13I	GGNCC	4 cut(s)	357, 404, 438, 485
Csp6I	GTAC	4 cut(s)	90, 327, 540, 546
CviAII	CATG	4 cut(s)	307, 489, 583, 637
CviQI	GTAC	4 cut(s)	90, 327, 540, 546
DdeI	CTNAG	2 cut(s)	755, 789
Eam1104I	CTCTTC	2 cut(s)	272, 627
EarI	CTCTTC	2 cut(s)	272, 627
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	4 cut(s)	306, 488, 582, 655
Eco24I	GRGCYC	2 cut(s)	262, 756
Eco47I	GGWCC	2 cut(s)	357, 438
Eco53kI	GAGCTC	1 cut(s)	754
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	322, 606
EcoT14I	CCWWGG	4 cut(s)	306, 488, 582, 655
EcoT38I	GRGCYC	2 cut(s)	262, 756
ErhI	CCWWGG	4 cut(s)	306, 488, 582, 655
FaeI	CATG	4 cut(s)	310, 492, 586, 640
FaiI	YATR	6 cut(s)	210, 308, 490, 584, 638, 696
FatI	CATG	4 cut(s)	306, 488, 582, 636
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	51, 294, 691
FokI	GGATG	3 cut(s)	44, 638, 754
FriOI	GRGCYC	2 cut(s)	262, 756
Fsp4HI	GCNGC	3 cut(s)	51, 294, 691
FspBI	CTAG	4 cut(s)	315, 444, 537, 543
GluI	GCNGC	3 cut(s)	51, 294, 691
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HaeIII	GGCC	2 cut(s)	406, 487
HapII	CCGG	4 cut(s)	54, 642, 708, 771
Hin1II	CATG	4 cut(s)	310, 492, 586, 640
HincII	GTYRAC	2 cut(s)	496, 508
HindII	GTYRAC	2 cut(s)	496, 508
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	4 cut(s)	54, 642, 708, 771
HphI	GGTGA	4 cut(s)	516, 596, 656, 791
Hpy166II	GTNNAC	4 cut(s)	360, 441, 496, 508
Hpy188I	TCNGA	2 cut(s)	679, 718
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 771
Hpy8I	GTNNAC	4 cut(s)	360, 441, 496, 508
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	285, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	696, 720
HpyF3I	CTNAG	2 cut(s)	755, 789
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	310, 492, 586, 640
Kpn2I	TCCGGA	1 cut(s)	770
LmnI	GCTCC	2 cut(s)	4, 773
Lsp1109I	GCAGC	2 cut(s)	62, 280
MaeI	CTAG	4 cut(s)	315, 444, 537, 543
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	779
MboII	GAAGA	4 cut(s)	289, 581, 611, 614
MflI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
MhlI	GDGCHC	5 cut(s)	164, 177, 262, 306, 756
MluCI	AATT	4 cut(s)	349, 397, 430, 478
MroI	TCCGGA	1 cut(s)	770
MroXI	GAANNNNTTC	2 cut(s)	316, 621
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	199, 410
MspI	CCGG	4 cut(s)	54, 642, 708, 771
MspR9I	CCNGG	4 cut(s)	55, 324, 608, 642
MvaI	CCWGG	2 cut(s)	324, 608
MwoI	GCNNNNNNNGC	2 cut(s)	696, 720
NciI	CCSGG	2 cut(s)	55, 642
NcoI	CCATGG	3 cut(s)	306, 488, 582
NlaIII	CATG	4 cut(s)	310, 492, 586, 640
NlaIV	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
NmuCI	GTSAC	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	316, 621
PfeI	GAWTC	2 cut(s)	100, 123
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	52, 295, 692
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	322, 606
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	322, 606
PspN4I	GGNNCC	7 cut(s)	245, 337, 358, 385, 418, 439, 466
PspPI	GGNCC	4 cut(s)	357, 404, 438, 485
PstI	CTGCAG	1 cut(s)	503
PsuI	RGATCY	6 cut(s)	133, 186, 335, 383, 416, 464
PvuII	CAGCTG	2 cut(s)	199, 410
RsaI	GTAC	4 cut(s)	91, 328, 541, 547
RsaNI	GTAC	4 cut(s)	90, 327, 540, 546
SacI	GAGCTC	1 cut(s)	756
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 691
Sau96I	GGNCC	4 cut(s)	357, 404, 438, 485
ScaI	AGTACT	2 cut(s)	541, 547
ScrFI	CCNGG	4 cut(s)	55, 324, 608, 642
SduI	GDGCHC	5 cut(s)	164, 177, 262, 306, 756
SfcI	CTRYAG	2 cut(s)	168, 499
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	357, 438
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 749
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 749
SpeI	ACTAGT	4 cut(s)	314, 443, 536, 542
Sse9I	AATT	4 cut(s)	349, 397, 430, 478
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	4 cut(s)	315, 444, 537, 543
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	4 cut(s)	53, 322, 606, 640
StyI	CCWWGG	4 cut(s)	306, 488, 582, 655
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	4 cut(s)	27, 262, 390, 495
TasI	AATT	4 cut(s)	349, 397, 430, 478
TatI	WGTACW	2 cut(s)	539, 545
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	367, 508
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	2 cut(s)	50, 293
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	2 cut(s)	290, 582
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	367, 508
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	357, 438
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	316, 621
XspI	CTAG	4 cut(s)	315, 444, 537, 543
ZrmI	AGTACT	2 cut(s)	541, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.