Rh7CG445400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000332
Physical Location & Seq
Forward (+)
58525276 .. 58527239
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG445400.1

Sequence Viewer

Length: 246 bp
ATGACAGGACACCATAAAGACTCTCTCCTGAAATCTCCAACTCCCAAATTACCCCGGCCCATGATCCTAATGACTTTATGTAAGAGGGAACATGAGAGGCAATCGAAGAAATTGAATATGCTTGCTGCTAATGAAGTTAAGGTCCCCGAGAAGGTTATAAGAGATACTGCTGGCAAGCTGGAATCCCTTGAGAAGGAAAAGTTGTCTCTTGAAGAGTCGATCAGGTCAACTTATGGAAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.24

Weight (kDa)

9.56

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AclWI GGATC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 151, 193
AgsI TTSAA 2 cut(s) 115, 212
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 57, 142
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 210
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 57, 142
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 193
BseDI CCNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 151, 193
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 151, 193
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 2 cut(s) 63, 219
BspANI GGCC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 63, 219
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 123, 172, 176
BstENI CCTNNNNNAGG 1 cut(s) 191
BstKTI GATC 2 cut(s) 66, 222
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 63, 219
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 123, 172, 176
Cfr13I GGNCC 2 cut(s) 57, 142
CviAII CATG 3 cut(s) 61, 92, 243
CviJI RGCY 2 cut(s) 58, 178
CviKI_1 RGCY 2 cut(s) 58, 178
DpnI GATC 2 cut(s) 65, 221
DpnII GATC 2 cut(s) 63, 219
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 142
FaeI CATG 3 cut(s) 64, 95, 246
FaiI YATR 8 cut(s) 15, 62, 79, 93, 119, 158, 234, 244
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 60, 91, 242
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 55
Hin1II CATG 3 cut(s) 64, 95, 246
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 20, 182, 215
HpaII CCGG 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 28, 209
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 145, 187
Hsp92II CATG 3 cut(s) 64, 95, 246
Kzo9I GATC 2 cut(s) 63, 219
LpnPI CCDG 5 cut(s) 41, 68, 156, 164, 208
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 2 cut(s) 65, 221
MboI GATC 2 cut(s) 63, 219
MboII GAAGA 2 cut(s) 118, 224
MluCI AATT 2 cut(s) 47, 110
MlyI GAGTC 2 cut(s) 14, 224
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 2 cut(s) 78, 90
MseI TTAA 1 cut(s) 138
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 55
NdeII GATC 2 cut(s) 63, 219
NlaIII CATG 3 cut(s) 64, 95, 246
NlaIV GGNNCC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 14, 223
PpsI GAGTC 2 cut(s) 14, 223
PpuMI RGGWCCY 1 cut(s) 142
PsiI TTATAA 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 57, 142
PspPPI RGGWCCY 1 cut(s) 142
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 63, 219
Sau96I GGNCC 2 cut(s) 57, 142
SchI GAGTC 2 cut(s) 14, 224
ScrFI CCNGG 1 cut(s) 55
SetI ASST 4 cut(s) 144, 156, 180, 227
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 47, 110
StyD4I CCNGG 1 cut(s) 53
TaqI TCGA 2 cut(s) 104, 218
TasI AATT 2 cut(s) 47, 110
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.