RchiOBHm_Chr7g0182401

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
3657510 .. 3659065
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16271

Sequence Viewer

Length: 1038 bp
ATGGTAATGCTCGGAATTACTTTGGGTCCTGAAGCTGAGGGTGCAGGAGGTAATGTGCCTTTTCCAAAGGTGTACTTGCACCCGATGATTTGTGATGCGCAAGGGCGTAAAATGTCAAAGTCTTTGGGGAATGTGGTTGATCCAGTTGATGTGATAAACGGTATTAGTCTTGAAGGTCTACATGAGAAGCTTTCAAAGGGAAACTTGGACAAGAAGGAAATAGAGGTTGCGAAAGAGTGGCAAAAGAAGTCCTTTCCTAATGGTATTGAAGAATGTGGTGCAGATGCTCTTCGTTTTGCTCTCATTACCTACACCCATCAGGCTGAGAATATAAATCTAGACATCAACAGGGTGATGGGTTATCGTCACTGGTGCAACAAACTGTGGAATGCAGTAAGGTTTGCTATGCTCAAACTTGGGGATGGTTATGTTCCACCTTCGAGTGAAATTAATCCGAATGAGCTTCCATTCATTTGCCAGTGGATCCTCTCAGTACTAAACAAAGCAATTGACAGAACTGTTTCGTCAATGGAGTCCTATAAGCTGTGCAACCAAAGCTGTCCTTACTTTGCTGGTAATGATCCAAAGTTTGCAGCAGAAAGGGAGTTTGCGAAACACACTCTTTGGCTATGTCTTGACACTGGATTAAGGCTGCTTCATCCTTTTATGCCCTTCATCACAGAAGAATTGTGGCAGCGCCTTCATCTTGCATCATCATCATCATCATCATTAGTAGCACCATCATCGATTATGATATGTGACTATCCATGCATGATAGAGTGCTGGAAGAATGAAGAAGTGGAGACTCAGATGGATAATGTTATTATTTCGGTTGTGAATTCTATACGCTCACTTGCAAAAGAAGGTCGTGAACGACGAGCAGCATTTGTGCTTAGTGGGATAAGAGAAGAGAGGGAGTTGATGTACAGCCAGTGTGCAATCATTGAAAAGTTAGCGAATGTGTCACCGATGAAGAGGGTGCTGCTCCAACTGGATGTGCACTTGTATAATTCTTGCTGTCTTCAACTTTGGCAGTGA

Protein Analysis

345

Amino Acids

39.02

Weight (kDa)

6.1

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 17 - 114 6.1e-17 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 160 - 284 1.8e-17 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 99
AccI GTMKAC 1 cut(s) 178
AclWI GGATC 4 cut(s) 134, 478, 491, 575
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 3 cut(s) 74, 495, 926
AgsI TTSAA 5 cut(s) 173, 195, 269, 947, 1025
AluBI AGCT 5 cut(s) 35, 190, 463, 544, 558
AluI AGCT 5 cut(s) 35, 190, 463, 544, 558
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 1 cut(s) 797
Alw44I GTGCAC 1 cut(s) 998
AlwI GGATC 4 cut(s) 134, 478, 491, 575
ApaLI GTGCAC 1 cut(s) 998
ApeKI GCWGC 5 cut(s) 593, 652, 694, 881, 982
ApoI RAATTY 1 cut(s) 838
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 2 cut(s) 100, 699
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 364, 957
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 1002
BamHI GGATCC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 1 cut(s) 1002
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 5 cut(s) 605, 639, 706, 893, 969
BccI CCATC 5 cut(s) 324, 349, 416, 748, 805
BcgI CGANNNNNNTGC 2 cut(s) 726, 760
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 700
BisI GCNGC 5 cut(s) 594, 653, 695, 882, 983
BlsI GCNGC 5 cut(s) 595, 654, 696, 883, 984
BmcAI AGTACT 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 27, 485
BmsI GCATC 3 cut(s) 85, 274, 719
BpiI GAAGAC 1 cut(s) 1013
Bpu10I CCTNAGC 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 746
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 908, 938
Bse1I ACTGG 6 cut(s) 143, 374, 478, 646, 931, 996
BseCI ATCGAT 1 cut(s) 746
BseGI GGATG 3 cut(s) 427, 658, 1000
BseMII CTCAG 4 cut(s) 27, 315, 504, 821
BseNI ACTGG 6 cut(s) 143, 374, 478, 646, 931, 996
BseSI GKGCMC 1 cut(s) 1002
BseXI GCAGC 5 cut(s) 605, 639, 706, 893, 969
BsgI GTGCAG 2 cut(s) 63, 300
BshVI ATCGAT 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 1002
BsmAI GTCTC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 1002
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 3 cut(s) 139, 483, 580
BspCNI CTCAG 4 cut(s) 28, 316, 503, 820
BspDI ATCGAT 1 cut(s) 746
BspLI GGNNCC 2 cut(s) 27, 485
BspPI GGATC 4 cut(s) 134, 478, 491, 575
BspQI GCTCTTC 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 6 cut(s) 143, 374, 478, 646, 931, 996
BssMI GATC 3 cut(s) 139, 483, 580
Bst4CI ACNGT 3 cut(s) 161, 384, 520
Bst6I CTCTTC 3 cut(s) 294, 903, 968
BstAUI TGTACA 1 cut(s) 924
BstDEI CTNAG 5 cut(s) 36, 324, 490, 807, 893
BstF5I GGATG 3 cut(s) 427, 658, 1000
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 2 cut(s) 100, 699
BstKTI GATC 3 cut(s) 142, 486, 583
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 3 cut(s) 139, 483, 580
BstMWI GCNNNNNNNGC 2 cut(s) 41, 555
BstSLI GKGCMC 1 cut(s) 1002
BstV1I GCAGC 5 cut(s) 605, 639, 706, 893, 969
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 746
BsuTUI ATCGAT 1 cut(s) 746
BtsCI GGATG 3 cut(s) 427, 658, 1000
BtsIMutI CAGTG 4 cut(s) 367, 485, 639, 938
CfoI GCGC 2 cut(s) 100, 699
Cfr13I GGNCC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 746
Csp6I GTAC 3 cut(s) 73, 494, 925
CviAII CATG 3 cut(s) 182, 768, 772
CviJI RGCY 9 cut(s) 35, 190, 323, 463, 544, 558, 628, 652, 930
CviKI_1 RGCY 9 cut(s) 35, 190, 323, 463, 544, 558, 628, 652, 930
CviQI GTAC 3 cut(s) 73, 494, 925
DdeI CTNAG 5 cut(s) 36, 324, 490, 807, 893
DpnI GATC 3 cut(s) 141, 485, 582
DpnII GATC 3 cut(s) 139, 483, 580
Eam1104I CTCTTC 3 cut(s) 294, 903, 968
EarI CTCTTC 3 cut(s) 294, 903, 968
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 838
EcoT22I ATGCAT 1 cut(s) 773
FaeI CATG 3 cut(s) 185, 771, 775
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 188, 220, 236, 268, 547, 579
FatI CATG 3 cut(s) 181, 767, 771
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 594, 653, 695, 882, 983
FokI GGATG 3 cut(s) 434, 645, 1007
Fsp4HI GCNGC 5 cut(s) 594, 653, 695, 882, 983
FspBI CTAG 1 cut(s) 338
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 2 cut(s) 99, 698
GluI GCNGC 5 cut(s) 594, 653, 695, 882, 983
HaeII RGCGCY 1 cut(s) 700
HhaI GCGC 2 cut(s) 100, 699
Hin1II CATG 3 cut(s) 185, 771, 775
Hin6I GCGC 2 cut(s) 98, 697
HinP1I GCGC 2 cut(s) 98, 697
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 533, 805
HphI GGTGA 2 cut(s) 364, 957
Hpy166II GTNNAC 4 cut(s) 73, 179, 872, 1000
Hpy188I TCNGA 3 cut(s) 14, 456, 810
Hpy188III TCNNGA 5 cut(s) 29, 170, 338, 635, 869
Hpy8I GTNNAC 4 cut(s) 73, 179, 872, 1000
Hpy99I CGWCG 1 cut(s) 879
HpyAV CCTTC 6 cut(s) 167, 208, 447, 682, 710, 857
HpyCH4III ACNGT 3 cut(s) 161, 384, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 555
HpyF3I CTNAG 5 cut(s) 36, 324, 490, 807, 893
Hsp92II CATG 3 cut(s) 185, 771, 775
HspAI GCGC 2 cut(s) 98, 697
Kzo9I GATC 3 cut(s) 139, 483, 580
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 990
Lsp1109I GCAGC 5 cut(s) 605, 639, 706, 893, 969
LweI GCATC 3 cut(s) 85, 274, 719
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 3 cut(s) 365, 758, 963
MalI GATC 3 cut(s) 141, 485, 582
MboI GATC 3 cut(s) 139, 483, 580
MboII GAAGA 8 cut(s) 281, 281, 695, 799, 806, 920, 985, 1013
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 1002
MluCI AATT 6 cut(s) 15, 447, 507, 686, 838, 1009
MlyI GAGTC 2 cut(s) 542, 799
MmeI TCCRAC 1 cut(s) 1012
MnlI CCTC 6 cut(s) 31, 41, 217, 497, 906, 969
Mph1103I ATGCAT 1 cut(s) 773
MroXI GAANNNNTTC 1 cut(s) 520
MseI TTAA 2 cut(s) 450, 647
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 41, 555
NdeII GATC 3 cut(s) 139, 483, 580
NlaIII CATG 3 cut(s) 185, 771, 775
NlaIV GGNNCC 2 cut(s) 27, 485
NmuCI GTSAC 3 cut(s) 365, 758, 963
NsbI TGCGCA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 520
PkrI GCNGC 5 cut(s) 595, 654, 696, 883, 984
PleI GAGTC 2 cut(s) 541, 799
PpsI GAGTC 2 cut(s) 541, 799
PpuMI RGGWCCY 1 cut(s) 26
PshBI ATTAAT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 27, 485
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 3 cut(s) 74, 495, 926
RsaNI GTAC 3 cut(s) 73, 494, 925
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 450, 647
SatI GCNGC 5 cut(s) 594, 653, 695, 882, 983
Sau3AI GATC 3 cut(s) 139, 483, 580
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 2 cut(s) 542, 799
SduI GDGCHC 1 cut(s) 1002
SfaNI GCATC 3 cut(s) 85, 274, 719
SinI GGWCC 1 cut(s) 26
Sse9I AATT 6 cut(s) 15, 447, 507, 686, 838, 1009
SspMI CTAG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 161, 384, 520
TaqI TCGA 2 cut(s) 440, 746
TasI AATT 6 cut(s) 15, 447, 507, 686, 838, 1009
TatI WGTACW 3 cut(s) 72, 493, 924
Tru1I TTAA 2 cut(s) 450, 647
Tru9I TTAA 2 cut(s) 450, 647
TscAI CASTG 4 cut(s) 374, 485, 646, 938
TseFI GTSAC 3 cut(s) 365, 758, 963
TseI GCWGC 5 cut(s) 593, 652, 694, 881, 982
Tsp45I GTSAC 3 cut(s) 365, 758, 963
TspDTI ATGAA 6 cut(s) 460, 647, 664, 692, 807, 986
TspRI CASTG 4 cut(s) 374, 485, 646, 938
VneI GTGCAC 1 cut(s) 998
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 838
XbaI TCTAGA 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.