Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

62340123 .. 62348198

Gene Structure 8076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3297 bp

ATGCTTGGCCCCTACTTTAGGGTTTTAGCCAAGCCGCCAAGCTCTTACCAGTCCATCGGCAACCAAATCAAAGTTGCAGCAGCGCCTTATCTCCTCCGTCACTTCCATATCCGCCCTCCTCTTCTTCAATCAGCTCCGGCCGGCAAAGCCATGGACGCTGGAATCGAAGACCCGGAGAAGAAGAAGAAGAAGAAGGAAGAGAAGGCAAGAGAGAAAGAATTGAAAAAGCAAAAAGCGTTAGAGAAAGCTGCCAAGTTCCAGGCACAACAAGCGAATGCTGCTTCGAAGAAGAGTGAGAAGAAGAGTGTGAAGCGTGGGAATGAAGAGGATGAAAATGCAGCTGATTTTGTTGATCCTCCGACTCCGGTTGGCCAGAAGAAGCAGATGTCTAAGCAGATGGCCAAACAGTACAGTCCAAGTGCTGTCGAGAAGGGGTGGTATGAGTGGTGGGAGGAAGTGGGGTACTTTGTGCCAGATGCTGAGAGCTCTAAACCTCCGTTTGTGATTGTTTTGCCGCCTCCCAATGTGACTGGCGCACTTCATATAGGCCATGCCCTTACTGCTGCTATTGAGGACACTATGATTCGTTGGCGAAGAATGTCAGGTTACAATGCCTTGTGGGTGCCTGGAATGGACCATGCTGGGATTGCAACTCAGGTTGTTGTAGAAAAGAAGCTGATGCGTGAGCGCAATTTAACCCGACATGATATTGGTCGCGACGAGTTTGTGTCTGAAGTTTGGAAATGGAAAAATAATTACGGGGGCACTATACTACAGCAGCTACGTCGTCTGGGTGCTTCATTGGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAGAGGTCAAATGCTGTGACGGAGGCTTTTGTGAGGCTTCATAAGCAAGGGCTTATCTACAGGGATAACCGCCTAGTGAATTGGGATTGTGTCTTGCGAACGGCAATATCTGAAATTGAGGTGGACTATATAGATATAAAAGAAAGAACATCTCTTGAGGTTCCTGGATACAAGAACCGTGTTGAATTTGGCGTTTTAACATCATTTGCATACCCTCTGGAAGACAATTTGGGTGAGATAGTTGTGGCAACCACCAGAGTGGAAACTATGCTCGGTGATACTGCTATTGCTGTACATCCAGATGATGACAGATATAAGCATCTTCATGGAAAGCATGCCATTCATCCATTTAATGGAAGAAGGATTCGTATAATCTGTGATGCAATTCTCGTTGATCCAGAGTTTGGGACTGGTGCTGTGAAGATTACTCCGGCCCATGATCCTAATGACTTTAACGTCGGAAAGCGCCATAATCTGGACTTTATAAACGTCTTCACTGATGATGGAAAAATAAACCAGGATGGTGGAGAGTTTGCAGGGATGCCACGCTTCAAAGCCCGGGAGGCAGTTACTGAAGCATTAAAGAAGAAGGGCCTCTTTAAAGAAGCAACGACAAATGAGATGCGTCTTGGTATATGCTCTAGAACCAAGGATGTTGTTGAACCCATGATAAAGCCCCAGTGGTATGTCAAATGTAGTGGTATGGCCAAGGGAGCCCTTGATGCTGCTGTAGATGATGATAATAGAAAGCTTGACATCATTCCGAGACAGTATAATGCTGATTGGAAGAGATGGCTTGAGAACATTCGTGATTGGTGCGTCTCACGGCAACTTTGGTGGGGTCACCGCATTCCTGCATGGTATGCCGTTTTGGATGGTGAGAAGCCAGAAGATTTTGGATCATTAGATGACCGATGGGTGGTTGCAAGAAATGAGGAAGAGGCTAAAGCACTGGCTAGTCAAAGATACGAGGGAAAGGAGGTTAAACTAGAACAGGATCCTGATGTGCTTGACACGTGGTTTTCTTCTGGTCTCTTCCCATTGTCCGTGTTGGGTTGGCCAGAAGATACAGAAGATTTAAGAGCTTTCTATCCAACTTCAGTTCTTGAAACTGGGCATGACATTCTCTTTTTCTGGGTCGCTCGTATGGTAATGCTTGGAAGTACATTGGGTGGTAATGTACCTTTCACAAAGGTGTATTTGCATCCAATGATTCGTGATGCGCATGGGCGTAAAATGTCCAAGTCCTTGGGGAATGTCATTGATCCTCTTGATGTGATCAATGGTATTTCGCTGGAAGATCTACACAAGAAGCTTTCAGAGGGAAATTTGGACCCGAGGGAAATAGCTATAGCCAAAGAAGGCCAAAAAAAGGATTTTCCTGATGGTATTGCTGAATGTGGTTCTGATGCGCTACATTTTGCTCTGGTCTCATACACTGCTCAGTCTGATAAGATAAATCTGGATATCCAAAGGGTTGTCGGTTACCGGCAGTGGTGTAATAAACTTTGGAACGCCGTACGATTTGCTATGAGCAAACTTGGGGATGATTATGTTCCGCCGTCAACAGTAATCCCTGATGTGCTTCCATTTAGTTGCCAGTGGATACTCTCGGTACTTAATAAAGCCATCTCCAAAACTATTTTTTCATTGGAATCGTACGAGTTTTCAGATGCAGCCACTGCAGTGTATGCTTGGTGGCAGTACCAATTGTGTGATGTGTTCATTGAAGCCATAAAACCCTACTTTGCTGGAAACAATCCAAAGTTTGCATCTGAAAGGGGTTTTGCACAAGACACGCTCTGGTTGTGTCTGGATACTGGACTACGGCTGCTTCACCCATTTATGCCTTTCGTTACCGAAGAACTATGGCAGCGTCTCCCATCATCCAAGCATCACAATAGGGCAGCATCAATTATGATATGCGACTACCCATCCATCGTGGAGTGCTGGACAAATGAAAGGGTGGAGTCTGAAATGAGTCTTATTGACTCTATTGTTAGATCTCTCCGGTCACTGTCTCAAGAGAGTCGTGAAAGACGACCAGCTTTTGTGCTGTGTCGATCAATGTCAGATCGAGAGATAATATGTAGACAACAACTAGAGATTGAAACTCTTGCCAATCTGTCATCTCTGACGGTAATCAGTGAGAATGAAGCTGCCCCAACTGGATGTGCTGTGTCTGTTGTAAACGAAAACCTATCTGTTTATCTGAAGGTTCTAGGATCTCGTTCTGCAGAAATAGATCTTGAAAAGATCCGGAAAAAGATGGAAGACATTAAATTGCAACAGGAGAAGATTACGAAGGTGATGAATGCTGCTGGTTACAAAGAAAAGGTCCCCGAGAAGATTCAAAAGGCTAATGCTGATAAACTTGAATCCCTCGAGAAGGAAAAACTGTCTCTTGAAGAGGCAAGCCAACATATGGAAGCACAGATATCGAGCAATAAACAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

1098

Amino Acids

124.73

Weight (kDa)

6.44

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	146 - 767	1e-143	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	172 - 234	6.9e-07	tRNA synthetases class I (M)
tRNA-synt_1_2	PF13603	388 - 448	5.8e-07	Leucyl-tRNA synthetase, editing domain
Anticodon_1	PF08264	813 - 953	2.2e-33	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1322
AasI	GACNNNNNNGTC	1 cut(s)	1292
Acc16I	TGCGCA	1 cut(s)	2061
AccB1I	GGYRCC	1 cut(s)	622
AccB7I	CCANNNNNTGG	4 cut(s)	1190, 1241, 1312, 3262
AccI	GTMKAC	1 cut(s)	2929
AccII	CGCG	1 cut(s)	717
AccIII	TCCGGA	1 cut(s)	3096
AciI	CCGC	6 cut(s)	35, 112, 515, 907, 1684, 2396
AclWI	GGATC	9 cut(s)	347, 1226, 1271, 1744, 1829, 1842, 2096, 3070, 3088
AcoI	YGGCCR	5 cut(s)	138, 370, 399, 1542, 1895
AcsI	RAATTY	2 cut(s)	1022, 2164
AcuI	CTGAAG	4 cut(s)	753, 1431, 1920, 3071
AcvI	CACGTG	1 cut(s)	1854
AfaI	GTAC	9 cut(s)	410, 464, 1131, 2002, 2019, 2358, 2454, 2498, 2543
AfiI	CCNNNNNNNGG	8 cut(s)	18, 1190, 1241, 1312, 1756, 2209, 3226, 3262
AflIII	ACRYGT	1 cut(s)	1851
AjnI	CCWGG	4 cut(s)	258, 625, 1000, 1353
AleI	CACNNNNGTG	3 cut(s)	1094, 2030, 2522
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	7 cut(s)	1597, 1663, 1874, 2272, 2720, 2862, 3243
AlwI	GGATC	9 cut(s)	347, 1226, 1271, 1744, 1829, 1842, 2096, 3070, 3088
AlwNI	CAGNNNCTG	3 cut(s)	479, 1409, 2519
Ama87I	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
Aor13HI	TCCGGA	1 cut(s)	3096
ApoI	RAATTY	2 cut(s)	1022, 2164
ArsI	GACNNNNNNTTYG	2 cut(s)	3159, 3191
AspLEI	GCGC	6 cut(s)	85, 536, 690, 1305, 2062, 2251
AspS9I	GGNCC	7 cut(s)	8, 634, 810, 1270, 1429, 2170, 3175
AsuC2I	CCSGG	3 cut(s)	173, 1396, 1397
AsuHPI	GGTGA	6 cut(s)	1082, 1124, 1673, 1727, 2666, 3157
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
AvaII	GGWCC	4 cut(s)	634, 810, 2170, 3175
BaeGI	GKGCMC	1 cut(s)	767
BalI	TGGCCA	4 cut(s)	372, 401, 1544, 1897
BamHI	GGATCC	1 cut(s)	1834
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	488, 1555
BbrPI	CACGTG	1 cut(s)	1854
BbsI	GAAGAC	4 cut(s)	174, 1065, 1321, 3117
Bbv12I	GWGCWC	1 cut(s)	488
BceAI	ACGGC	6 cut(s)	954, 1679, 1688, 2339, 2383, 2681
BcgI	CGANNNNNNTGC	4 cut(s)	767, 801, 3258, 3292
BciT130I	CCWGG	4 cut(s)	260, 627, 1002, 1355
BciVI	GTATCC	3 cut(s)	998, 2436, 2647
BclI	TGATCA	1 cut(s)	2115
BcnI	CCSGG	3 cut(s)	173, 1396, 1397
BcoDI	GTCTC	7 cut(s)	1597, 1663, 1874, 2272, 2720, 2862, 3243
BfaI	CTAG	6 cut(s)	911, 1479, 1794, 1826, 2939, 3059
BfmI	CTRYAG	6 cut(s)	773, 895, 1566, 2187, 2520, 3072
BfoI	RGCGCY	2 cut(s)	86, 1306
BfuI	GTATCC	3 cut(s)	998, 2436, 2647
BglI	GCCNNNNNGGC	1 cut(s)	1400
BglII	AGATCT	3 cut(s)	2137, 2840, 3082
Bme1390I	CCNGG	7 cut(s)	173, 260, 627, 1002, 1355, 1396, 1397
Bme18I	GGWCC	4 cut(s)	634, 810, 2170, 3175
BmeT110I	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
BmgT120I	GGNCC	7 cut(s)	8, 634, 810, 1270, 1429, 2170, 3175
BmiI	GGNNCC	8 cut(s)	10, 624, 812, 999, 1552, 1836, 2172, 3177
BmrFI	CCNGG	7 cut(s)	173, 260, 627, 1002, 1355, 1396, 1397
BmrI	ACTGGG	2 cut(s)	1510, 1959
BmuI	ACTGGG	2 cut(s)	1510, 1959
BpiI	GAAGAC	4 cut(s)	174, 1065, 1321, 3117
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	3 cut(s)	1013, 1655, 2844
BpuMI	CCSGG	3 cut(s)	173, 1396, 1397
BsaAI	YACGTR	1 cut(s)	1854
BsaI	GGTCTC	2 cut(s)	1874, 2272
BsaJI	CCNNGG	6 cut(s)	150, 1395, 1485, 1545, 2085, 2174
BsaWI	WCCGGW	3 cut(s)	364, 2847, 3096
Bsc4I	CCNNNNNNNGG	8 cut(s)	18, 1190, 1241, 1312, 1756, 2209, 3226, 3262
Bse118I	RCCGGY	2 cut(s)	140, 2325
Bse1I	ACTGG	9 cut(s)	49, 535, 1252, 1516, 1794, 1954, 2437, 2662, 3010
BseAI	TCCGGA	1 cut(s)	3096
BseBI	CCWGG	4 cut(s)	260, 627, 1002, 1355
BseDI	CCNNGG	6 cut(s)	150, 1395, 1485, 1545, 2085, 2174
BseLI	CCNNNNNNNGG	8 cut(s)	18, 1190, 1241, 1312, 1756, 2209, 3226, 3262
BseMII	CTCAG	3 cut(s)	471, 668, 2294
BseNI	ACTGG	9 cut(s)	49, 535, 1252, 1516, 1794, 1954, 2437, 2662, 3010
BseRI	GAGGAG	2 cut(s)	83, 108
BseSI	GKGCMC	1 cut(s)	767
BseX3I	CGGCCG	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	717
Bsh1285I	CGRYCG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	488
BsiHKCI	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
BsiSI	CCGG	9 cut(s)	137, 141, 173, 365, 1268, 1396, 2326, 2848, 3097
BsiWI	CGTACG	2 cut(s)	2356, 2496
BslFI	GGGAC	3 cut(s)	796, 1258, 3161
BslI	CCNNNNNNNGG	8 cut(s)	18, 1190, 1241, 1312, 1756, 2209, 3226, 3262
BsmAI	GTCTC	7 cut(s)	1597, 1663, 1874, 2272, 2720, 2862, 3243
BsmBI	CGTCTC	2 cut(s)	1663, 2720
BsmFI	GGGAC	3 cut(s)	796, 1258, 3161
BsmI	GAATGC	3 cut(s)	280, 1686, 3157
Bso31I	GGTCTC	2 cut(s)	1874, 2272
BsoBI	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	488, 767, 1555
Bsp13I	TCCGGA	1 cut(s)	3096
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	717
BspACI	CCGC	6 cut(s)	35, 112, 515, 907, 1684, 2396
BspCNI	CTCAG	3 cut(s)	472, 667, 2293
BspEI	TCCGGA	1 cut(s)	3096
BspFNI	CGCG	1 cut(s)	717
BspLI	GGNNCC	8 cut(s)	10, 624, 812, 999, 1552, 1836, 2172, 3177
BspMAI	CTGCAG	2 cut(s)	2524, 3076
BspPI	GGATC	9 cut(s)	347, 1226, 1271, 1744, 1829, 1842, 2096, 3070, 3088
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	2 cut(s)	1874, 2272
BsrFI	RCCGGY	2 cut(s)	140, 2325
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	9 cut(s)	49, 535, 1252, 1516, 1794, 1954, 2437, 2662, 3010
BssAI	RCCGGY	2 cut(s)	140, 2325
BssECI	CCNNGG	6 cut(s)	150, 1395, 1485, 1545, 2085, 2174
BssT1I	CCWWGG	4 cut(s)	150, 1485, 1545, 2085
Bst2UI	CCWGG	4 cut(s)	260, 627, 1002, 1355
Bst4CI	ACNGT	8 cut(s)	408, 413, 1016, 1608, 2407, 2856, 2977, 3237
BstAPI	GCANNNNNTGC	3 cut(s)	1700, 2519, 2528
BstAUI	TGTACA	1 cut(s)	1129
BstBAI	YACGTR	1 cut(s)	1854
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	142, 1173, 3253
BstDEI	CTNAG	4 cut(s)	390, 480, 654, 2280
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	2 cut(s)	1679, 2321
BstENI	CCTNNNNNAGG	2 cut(s)	16, 3224
BstFNI	CGCG	1 cut(s)	717
BstH2I	RGCGCY	2 cut(s)	86, 1306
BstHHI	GCGC	6 cut(s)	85, 536, 690, 1305, 2062, 2251
BstMAI	GTCTC	7 cut(s)	1597, 1663, 1874, 2272, 2720, 2862, 3243
BstMCI	CGRYCG	1 cut(s)	141
BstNI	CCWGG	4 cut(s)	260, 627, 1002, 1355
BstNSI	RCATGY	1 cut(s)	1175
BstPI	GGTNACC	2 cut(s)	1679, 2321
BstSCI	CCNGG	7 cut(s)	171, 258, 625, 1000, 1353, 1394, 1395
BstSFI	CTRYAG	6 cut(s)	773, 895, 1566, 2187, 2520, 3072
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	1 cut(s)	717
BstV2I	GAAGAC	4 cut(s)	174, 1065, 1321, 3117
BstX2I	RGATCY	6 cut(s)	1834, 2137, 2840, 3062, 3082, 3093
BstXI	CCANNNNNNTGG	3 cut(s)	1096, 1361, 2086
BstYI	RGATCY	6 cut(s)	1834, 2137, 2840, 3062, 3082, 3093
BstZI	CGGCCG	1 cut(s)	138
BsuI	GTATCC	3 cut(s)	998, 2436, 2647
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	4 cut(s)	2274, 2336, 2517, 2529
BtuMI	TCGCGA	1 cut(s)	717
Cac8I	GCNNGC	3 cut(s)	142, 1173, 3253
CaiI	CAGNNNCTG	3 cut(s)	479, 1409, 2519
CfoI	GCGC	6 cut(s)	85, 536, 690, 1305, 2062, 2251
Cfr10I	RCCGGY	2 cut(s)	140, 2325
Cfr13I	GGNCC	7 cut(s)	8, 634, 810, 1270, 1429, 2170, 3175
Cfr9I	CCCGGG	1 cut(s)	1395
CseI	GACGC	4 cut(s)	164, 1451, 1645, 2702
Csp6I	GTAC	9 cut(s)	409, 463, 1130, 2001, 2018, 2357, 2453, 2497, 2542
CspCI	CAANNNNNGTGG	4 cut(s)	1516, 1551, 1655, 1690
CviQI	GTAC	9 cut(s)	409, 463, 1130, 2001, 2018, 2357, 2453, 2497, 2542
DdeI	CTNAG	4 cut(s)	390, 480, 654, 2280
DraI	TTTAAA	1 cut(s)	1438
DrdI	GACNNNNNNGTC	1 cut(s)	1292
DseDI	GACNNNNNNGTC	1 cut(s)	1292
EaeI	YGGCCR	5 cut(s)	138, 370, 399, 1542, 1895
EagI	CGGCCG	1 cut(s)	138
EciI	GGCGGA	2 cut(s)	101, 2385
Ecl136II	GAGCTC	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	4 cut(s)	150, 1485, 1545, 2085
Eco24I	GRGCYC	2 cut(s)	488, 1555
Eco31I	GGTCTC	2 cut(s)	1874, 2272
Eco32I	GATATC	2 cut(s)	2305, 3276
Eco47I	GGWCC	4 cut(s)	634, 810, 2170, 3175
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	486
Eco57I	CTGAAG	4 cut(s)	753, 1431, 1920, 3071
Eco72I	CACGTG	1 cut(s)	1854
Eco88I	CYCGRG	4 cut(s)	1395, 2173, 3179, 3221
Eco91I	GGTNACC	2 cut(s)	1679, 2321
EcoICRI	GAGCTC	1 cut(s)	486
EcoNI	CCTNNNNNAGG	2 cut(s)	16, 3224
EcoO109I	RGGNCCY	2 cut(s)	1429, 3175
EcoO65I	GGTNACC	2 cut(s)	1679, 2321
EcoRII	CCWGG	4 cut(s)	258, 625, 1000, 1353
EcoRV	GATATC	2 cut(s)	2305, 3276
EcoT14I	CCWWGG	4 cut(s)	150, 1485, 1545, 2085
EcoT38I	GRGCYC	2 cut(s)	488, 1555
ErhI	CCWWGG	4 cut(s)	150, 1485, 1545, 2085
Esp3I	CGTCTC	2 cut(s)	1663, 2720
FalI	AAGNNNNNCTT	2 cut(s)	1418, 1450
FaqI	GGGAC	3 cut(s)	796, 1258, 3161
FauNDI	CATATG	1 cut(s)	3261
FbaI	TGATCA	1 cut(s)	2115
FblI	GTMKAC	1 cut(s)	2929
FriOI	GRGCYC	2 cut(s)	488, 1555
FspAI	RTGCGCAY	1 cut(s)	2061
FspBI	CTAG	6 cut(s)	911, 1479, 1794, 1826, 2939, 3059
FspI	TGCGCA	1 cut(s)	2061
GlaI	GCGC	6 cut(s)	84, 535, 689, 1304, 2061, 2250
GsaI	CCCAGC	1 cut(s)	645
HaeII	RGCGCY	2 cut(s)	86, 1306
HapII	CCGG	9 cut(s)	137, 141, 173, 365, 1268, 1396, 2326, 2848, 3097
HgaI	GACGC	4 cut(s)	164, 1451, 1645, 2702
HhaI	GCGC	6 cut(s)	85, 536, 690, 1305, 2062, 2251
Hin6I	GCGC	6 cut(s)	83, 534, 688, 1303, 2060, 2249
HinP1I	GCGC	6 cut(s)	83, 534, 688, 1303, 2060, 2249
HincII	GTYRAC	1 cut(s)	2403
HindII	GTYRAC	1 cut(s)	2403
HindIII	AAGCTT	2 cut(s)	1586, 2150
HpaII	CCGG	9 cut(s)	137, 141, 173, 365, 1268, 1396, 2326, 2848, 3097
HphI	GGTGA	6 cut(s)	1082, 1124, 1673, 1727, 2666, 3157
Hpy166II	GTNNAC	4 cut(s)	961, 2403, 2930, 3028
Hpy8I	GTNNAC	4 cut(s)	961, 2403, 2930, 3028
Hpy99I	CGWCG	3 cut(s)	722, 789, 1298
HpyAV	CCTTC	9 cut(s)	187, 196, 424, 1191, 1420, 2192, 3046, 3136, 3220
HpyCH4III	ACNGT	8 cut(s)	408, 413, 1016, 1608, 2407, 2856, 2977, 3237
HpyCH4IV	ACGT	4 cut(s)	784, 1293, 1326, 1853
HpyF3I	CTNAG	4 cut(s)	390, 480, 654, 2280
HpySE526I	ACGT	4 cut(s)	784, 1293, 1326, 1853
HspAI	GCGC	6 cut(s)	83, 534, 688, 1303, 2060, 2249
Kpn2I	TCCGGA	1 cut(s)	3096
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	2115
LmnI	GCTCC	2 cut(s)	139, 1550
MaeI	CTAG	6 cut(s)	911, 1479, 1794, 1826, 2939, 3059
MaeII	ACGT	4 cut(s)	784, 1293, 1326, 1853
MfeI	CAATTG	1 cut(s)	2546
MflI	RGATCY	6 cut(s)	1834, 2137, 2840, 3062, 3082, 3093
MhlI	GDGCHC	3 cut(s)	488, 767, 1555
MlsI	TGGCCA	4 cut(s)	372, 401, 1544, 1897
MluNI	TGGCCA	4 cut(s)	372, 401, 1544, 1897
MlyI	GAGTC	5 cut(s)	355, 2816, 2822, 2827, 2875
MmeI	TCCRAC	3 cut(s)	383, 1276, 1955
Mox20I	TGGCCA	4 cut(s)	372, 401, 1544, 1897
MroI	TCCGGA	1 cut(s)	3096
MroNI	GCCGGC	1 cut(s)	140
MscI	TGGCCA	4 cut(s)	372, 401, 1544, 1897
MslI	CAYNNNNRTG	5 cut(s)	1094, 1137, 1161, 2030, 2522
Msp20I	TGGCCA	4 cut(s)	372, 401, 1544, 1897
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	9 cut(s)	137, 141, 173, 365, 1268, 1396, 2326, 2848, 3097
MspR9I	CCNGG	7 cut(s)	173, 260, 627, 1002, 1355, 1396, 1397
MunI	CAATTG	1 cut(s)	2546
Mva1269I	GAATGC	3 cut(s)	280, 1686, 3157
MvaI	CCWGG	4 cut(s)	260, 627, 1002, 1355
MvnI	CGCG	1 cut(s)	717
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	3 cut(s)	173, 1396, 1397
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	3261
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	8 cut(s)	10, 624, 812, 999, 1552, 1836, 2172, 3177
NmuCI	GTSAC	5 cut(s)	98, 526, 853, 1679, 2850
NruI	TCGCGA	1 cut(s)	717
NsbI	TGCGCA	1 cut(s)	2061
NspI	RCATGY	1 cut(s)	1175
NspV	TTCGAA	1 cut(s)	284
OliI	CACNNNNGTG	3 cut(s)	1094, 2030, 2522
PaeI	GCATGC	1 cut(s)	1175
PaeR7I	CTCGAG	1 cut(s)	3221
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 2875
PctI	GAATGC	3 cut(s)	280, 1686, 3157
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	7 cut(s)	162, 583, 1201, 2050, 2492, 3187, 3215
Pfl23II	CGTACG	2 cut(s)	2356, 2496
PflMI	CCANNNNNTGG	4 cut(s)	1190, 1241, 1312, 3262
PfoI	TCCNGGA	1 cut(s)	1000
PleI	GAGTC	5 cut(s)	355, 2815, 2822, 2826, 2874
PmaCI	CACGTG	1 cut(s)	1854
PmlI	CACGTG	1 cut(s)	1854
PpsI	GAGTC	5 cut(s)	355, 2815, 2822, 2826, 2874
Ppu21I	YACGTR	1 cut(s)	1854
PpuMI	RGGWCCY	1 cut(s)	3175
PsiI	TTATAA	1 cut(s)	1322
Psp124BI	GAGCTC	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	3175
Psp6I	CCWGG	4 cut(s)	258, 625, 1000, 1353
PspCI	CACGTG	1 cut(s)	1854
PspEI	GGTNACC	2 cut(s)	1679, 2321
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	4 cut(s)	258, 625, 1000, 1353
PspLI	CGTACG	2 cut(s)	2356, 2496
PspN4I	GGNNCC	8 cut(s)	10, 624, 812, 999, 1552, 1836, 2172, 3177
PspPI	GGNCC	7 cut(s)	8, 634, 810, 1270, 1429, 2170, 3175
PspPPI	RGGWCCY	1 cut(s)	3175
PstI	CTGCAG	2 cut(s)	2524, 3076
PstNI	CAGNNNCTG	3 cut(s)	479, 1409, 2519
PsuI	RGATCY	6 cut(s)	1834, 2137, 2840, 3062, 3082, 3093
PvuII	CAGCTG	1 cut(s)	341
RruI	TCGCGA	1 cut(s)	717
RsaI	GTAC	9 cut(s)	410, 464, 1131, 2002, 2019, 2358, 2454, 2498, 2543
RsaNI	GTAC	9 cut(s)	409, 463, 1130, 2001, 2018, 2357, 2453, 2497, 2542
RseI	CAYNNNNRTG	5 cut(s)	1094, 1137, 1161, 2030, 2522
SacI	GAGCTC	1 cut(s)	488
Sau96I	GGNCC	7 cut(s)	8, 634, 810, 1270, 1429, 2170, 3175
SchI	GAGTC	5 cut(s)	355, 2816, 2822, 2827, 2875
ScrFI	CCNGG	7 cut(s)	173, 260, 627, 1002, 1355, 1396, 1397
SduI	GDGCHC	3 cut(s)	488, 767, 1555
SfcI	CTRYAG	6 cut(s)	773, 895, 1566, 2187, 2520, 3072
Sfr274I	CTCGAG	1 cut(s)	3221
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	4 cut(s)	634, 810, 2170, 3175
SlaI	CTCGAG	1 cut(s)	3221
SmaI	CCCGGG	1 cut(s)	1397
SmiMI	CAYNNNNRTG	5 cut(s)	1094, 1137, 1161, 2030, 2522
SmlI	CTYRAG	4 cut(s)	992, 1634, 2859, 3221
SmoI	CTYRAG	4 cut(s)	992, 1634, 2859, 3221
SphI	GCATGC	1 cut(s)	1175
SsiI	CCGC	6 cut(s)	35, 112, 515, 907, 1684, 2396
SspMI	CTAG	6 cut(s)	911, 1479, 1794, 1826, 2939, 3059
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	7 cut(s)	171, 258, 625, 1000, 1353, 1394, 1395
StyI	CCWWGG	4 cut(s)	150, 1485, 1545, 2085
TaaI	ACNGT	8 cut(s)	408, 413, 1016, 1608, 2407, 2856, 2977, 3237
TaiI	ACGT	4 cut(s)	787, 1296, 1329, 1856
TaqI	TCGA	7 cut(s)	165, 284, 426, 2899, 2914, 3222, 3278
TaqII	GACCGA	1 cut(s)	1764
TatI	WGTACW	3 cut(s)	408, 1129, 2000
TauI	GCSGC	2 cut(s)	37, 517
TfiI	GAWTC	7 cut(s)	162, 583, 1201, 2050, 2492, 3187, 3215
TseFI	GTSAC	5 cut(s)	98, 526, 853, 1679, 2850
Tsp45I	GTSAC	5 cut(s)	98, 526, 853, 1679, 2850
TspGWI	ACGGA	4 cut(s)	86, 486, 872, 1873
TspMI	CCCGGG	1 cut(s)	1395
Van91I	CCANNNNNTGG	4 cut(s)	1190, 1241, 1312, 3262
VpaK11BI	GGWCC	4 cut(s)	634, 810, 2170, 3175
XagI	CCTNNNNNAGG	2 cut(s)	16, 3224
XapI	RAATTY	2 cut(s)	1022, 2164
XbaI	TCTAGA	1 cut(s)	1478
XceI	RCATGY	1 cut(s)	1175
XhoI	CTCGAG	1 cut(s)	3221
XmaI	CCCGGG	1 cut(s)	1395
XmiI	GTMKAC	1 cut(s)	2929
XspI	CTAG	6 cut(s)	911, 1479, 1794, 1826, 2939, 3059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.