Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

3671572 .. 3672448

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATCATAAAGCCTGAGCGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCTGATGATGAAAATAGGAAGCTGGAGATTATCCCAAGACAGTATACTGCTGAATGGAAGAGGTGCTCATTTTTTCCTTATTGTGCTGGTGATAACAACGAAGAATTTGGAAAACAATTTGAGCGATGGGTGGTTGCAGGAAGTGAGGAAGAGGCTCAAGCATTGGCTGATCAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACTCAGATGTGCTTGACAGGTGGTTTTCGTCTGGTCTTTTCCCATTGTCGGTATTGGGCTGGCCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

128

Amino Acids

14.85

Weight (kDa)

4.82

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	67 - 128	1.3e-08	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	12, 212
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	95, 130
AluI	AGCT	2 cut(s)	95, 130
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	12, 212
AsuHPI	GGTGA	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	48, 333
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	364
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	49, 332
BspLI	GGNNCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	61
BssMI	GATC	1 cut(s)	277
BssNAI	GTATAC	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	161, 252
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	8, 57, 319
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	8 cut(s)	43, 55, 95, 130, 263, 275, 375, 379
CviKI_1	RGCY	8 cut(s)	43, 55, 95, 130, 263, 275, 375, 379
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	8, 57, 319
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	161, 252
EarI	CTCTTC	2 cut(s)	161, 252
FaiI	YATR	4 cut(s)	50, 83, 153, 288
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	380
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	75, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	3 cut(s)	8, 57, 319
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	69, 116, 180, 231, 299, 319, 333, 361
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	21
MalI	GATC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	178, 221, 269
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	3 cut(s)	12, 212, 224
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	162, 247, 253, 283
MseI	TTAA	2 cut(s)	69, 385
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	69, 385
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	4 cut(s)	97, 132, 173, 338
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	12, 212, 224
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	12, 212, 224
Tru1I	TTAA	2 cut(s)	69, 385
Tru9I	TTAA	2 cut(s)	69, 385
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	105, 132
XapI	RAATTY	2 cut(s)	12, 212
XbaI	TCTAGA	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.