Rmu_sc0029500.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029500.1
Physical Location & Seq
Forward (+)
1 .. 642
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029500.1_g000001.1.cds

Sequence Viewer

Length: 515 bp
ccaaagctgtgtatgggtggtggcagaatcagttgtgtgatattttcatcaagccttactttgctggtaatgatccaaagtttgcagcagaaagggagtttgcgaaacacactctttggctatgtcttgacactggattaaggctgcttcatccttttatgcccttcatcacagaagaattgtggcagcgtcttcatcttgcatcatcatcatcatcatcattagtagcaccatcatcgattatgatatgtgactatccatgcatgatagagtgctggaagaatgaagaagtggagactcagatggatactgttattatttcggttgtgaattctatacgctcacttgcaaaagaaggtcgtgaacgacgagcagcatttgtgcttagtgggataagagaagagagggagttgatgtgcagccagtgtgcaataattgaaaagttagcgaatgtgtcacagttggcgataatccatgaagagggtgctgctccaactggatgtgcacttgtataa

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

5.4

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 480
AgsI TTSAA 1 cut(s) 439
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 289
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 6 cut(s) 85, 144, 186, 373, 419, 487
ApoI RAATTY 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 6 cut(s) 97, 131, 198, 385, 431, 474
BccI CCATC 2 cut(s) 240, 297
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciVI GTATCC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 289
BfuI GTATCC 1 cut(s) 300
BisI GCNGC 6 cut(s) 86, 145, 187, 374, 420, 488
BlsI GCNGC 6 cut(s) 87, 146, 188, 375, 421, 489
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse1I ACTGG 3 cut(s) 138, 423, 501
BseCI ATCGAT 1 cut(s) 238
BseGI GGATG 2 cut(s) 150, 505
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 3 cut(s) 138, 423, 501
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 6 cut(s) 97, 131, 198, 385, 431, 474
BsgI GTGCAG 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 312
BspDI ATCGAT 1 cut(s) 238
BspPI GGATC 1 cut(s) 67
BsrI ACTGG 3 cut(s) 138, 423, 501
BssMI GATC 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 312, 461
Bst6I CTCTTC 2 cut(s) 395, 473
BstDEI CTNAG 2 cut(s) 299, 385
BstF5I GGATG 2 cut(s) 150, 505
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 507
BstV1I GCAGC 6 cut(s) 97, 131, 198, 385, 431, 474
BstV2I GAAGAC 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 238
BsuI GTATCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 238
BtsCI GGATG 2 cut(s) 150, 505
BtsIMutI CAGTG 2 cut(s) 131, 430
ClaI ATCGAT 1 cut(s) 238
CseI GACGC 1 cut(s) 178
CviAII CATG 3 cut(s) 260, 264, 475
CviJI RGCY 5 cut(s) 7, 54, 120, 144, 422
CviKI_1 RGCY 5 cut(s) 7, 54, 120, 144, 422
DdeI CTNAG 2 cut(s) 299, 385
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 395, 473
EarI CTCTTC 2 cut(s) 395, 473
EcoRI GAATTC 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 3 cut(s) 263, 267, 478
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 3 cut(s) 259, 263, 474
Fnu4HI GCNGC 6 cut(s) 86, 145, 187, 374, 420, 488
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 6 cut(s) 86, 145, 187, 374, 420, 488
GluI GCNGC 6 cut(s) 86, 145, 187, 374, 420, 488
HgaI GACGC 1 cut(s) 178
Hin1II CATG 3 cut(s) 263, 267, 478
HinfI GANTC 2 cut(s) 27, 297
Hpy166II GTNNAC 2 cut(s) 364, 505
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 2 cut(s) 127, 361
Hpy8I GTNNAC 2 cut(s) 364, 505
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 174, 349
HpyCH4III ACNGT 2 cut(s) 312, 461
HpyCH4V TGCA 7 cut(s) 85, 202, 263, 349, 419, 430, 505
HpyF3I CTNAG 2 cut(s) 299, 385
Hsp92II CATG 3 cut(s) 263, 267, 478
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 5 cut(s) 50, 119, 261, 436, 482
Lsp1109I GCAGC 6 cut(s) 97, 131, 198, 385, 431, 474
LweI GCATC 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 250, 455
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 6 cut(s) 184, 187, 291, 298, 412, 490
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 3 cut(s) 178, 330, 434
MlyI GAGTC 1 cut(s) 291
MnlI CCTC 2 cut(s) 398, 474
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 1 cut(s) 139
NdeII GATC 1 cut(s) 72
NlaIII CATG 3 cut(s) 263, 267, 478
NmuCI GTSAC 2 cut(s) 250, 455
NsiI ATGCAT 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 87, 146, 188, 375, 421, 489
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 139
SatI GCNGC 6 cut(s) 86, 145, 187, 374, 420, 488
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 291
SduI GDGCHC 1 cut(s) 507
SetI ASST 2 cut(s) 9, 360
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 3 cut(s) 178, 330, 434
TaaI ACNGT 2 cut(s) 312, 461
TaqI TCGA 1 cut(s) 238
TasI AATT 3 cut(s) 178, 330, 434
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 139
Tru9I TTAA 1 cut(s) 139
TscAI CASTG 2 cut(s) 138, 430
TseFI GTSAC 2 cut(s) 250, 455
TseI GCWGC 6 cut(s) 85, 144, 186, 373, 419, 487
Tsp45I GTSAC 2 cut(s) 250, 455
TspDTI ATGAA 6 cut(s) 36, 139, 156, 184, 299, 491
TspRI CASTG 2 cut(s) 138, 430
VneI GTGCAC 1 cut(s) 503
XapI RAATTY 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.