Rh7DG417300

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
58723336 .. 58733761
10426 bp
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UTR
Exon/CDS
Intron
Rh7DG417300.1

Sequence Viewer

Length: 537 bp
ATGCAGGCCAGATTTCACGAACTGAAAAAGCAAAAGGCTTTAGAGAAAGCTTCCAAGCTTCAGGCACAAAAAGCTAATCCTACGAACAGTGAAAAGAAGAAACTTCGCAACGAGGACGCCGGCGACAATGCCAACCCTCCGACCCCAGTCGGCGAAAAGAAACGATTGTCTCCTCAAATGGCTAAACACTACAGTCCAAGTGATGTAGAGATGGCGTGGTACCCGTTTTGGGAGACACAAGGCTACTTTGTCGCAGATGCTAAAAGTCACAAACCTCCATTTGCCTTGCCCCTGCCGCCTCCCAATGTGACTGGTACCCTTCATTTAGGACATGCTCTTACTGCTGCTATTCAGGACACTTTGATTCGTCATCGGAGAATGTCAGGTTATAATACCTTGTGGTCTCCTGGACTTGACCATGCTGGCATAGCAACACAGGTTGTTGTGGAAAAGAAGCTAATGCGTGAAAGTGGTAAAACCAGACATGATATCGGTCGCGAGGAATTTATCTCTAAAGGATATTCAGGAGTCGTTTAA

Protein Analysis

178

Amino Acids

19.91

Weight (kDa)

9.72

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 73 - 172 3.4e-34 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g PF09334 102 - 152 8.1e-06 tRNA synthetases class I (M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc65I GGTACC 2 cut(s) 219, 314
AccB1I GGYRCC 2 cut(s) 219, 314
AccII CGCG 1 cut(s) 498
AciI CCGC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 2 cut(s) 221, 316
AfiI CCNNNNNNNGG 1 cut(s) 229
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 4 cut(s) 50, 58, 74, 457
AluI AGCT 4 cut(s) 50, 58, 74, 457
Alw26I GTCTC 3 cut(s) 174, 227, 408
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 503
Asp718I GGTACC 2 cut(s) 219, 314
BanI GGYRCC 2 cut(s) 219, 314
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 174, 227, 408
BfmI CTRYAG 1 cut(s) 190
BisI GCNGC 2 cut(s) 296, 345
BlsI GCNGC 2 cut(s) 297, 346
Bme1390I CCNGG 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 221, 316
BmrFI CCNGG 1 cut(s) 408
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 140
BoxI GACNNNNGTC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 146, 316
BseBI CCWGG 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 146, 316
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 2 cut(s) 219, 314
BsiEI CGRYCG 1 cut(s) 496
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 174, 227, 408
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 408
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 8
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 221, 316
BspT107I GGYRCC 2 cut(s) 219, 314
BspTNI GGTCTC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 146, 316
BssAI RCCGGY 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 89, 194
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 6, 121, 424
BstFNI CGCG 1 cut(s) 498
BstMAI GTCTC 3 cut(s) 174, 227, 408
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 4 cut(s) 71, 295, 341, 428
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 190
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 94
BtuMI TCGCGA 1 cut(s) 498
Cac8I GCNNGC 3 cut(s) 6, 121, 424
Cfr10I RCCGGY 1 cut(s) 119
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 220, 315
CviAII CATG 3 cut(s) 332, 419, 485
CviJI RGCY 8 cut(s) 8, 38, 50, 58, 74, 182, 243, 457
CviKI_1 RGCY 8 cut(s) 8, 38, 50, 58, 74, 182, 243, 457
CviQI GTAC 2 cut(s) 220, 315
Eco31I GGTCTC 1 cut(s) 408
Eco32I GATATC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 406
EcoRV GATATC 1 cut(s) 490
FaeI CATG 3 cut(s) 335, 422, 488
FaiI YATR 5 cut(s) 333, 390, 420, 428, 486
FatI CATG 3 cut(s) 331, 418, 484
Fnu4HI GCNGC 2 cut(s) 296, 345
Fsp4HI GCNGC 2 cut(s) 296, 345
GluI GCNGC 2 cut(s) 296, 345
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 335, 422, 488
HindIII AAGCTT 2 cut(s) 48, 56
HinfI GANTC 2 cut(s) 364, 528
HpaII CCGG 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 141, 375
Hpy188III TCNNGA 4 cut(s) 17, 353, 497, 525
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 89, 194
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 295, 341, 428
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 335, 422, 488
KpnI GGTACC 2 cut(s) 223, 318
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 266, 307
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 503
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 6 cut(s) 106, 147, 183, 285, 309, 493
MreI CGCCGGCG 1 cut(s) 119
MroNI GCCGGC 1 cut(s) 119
MseI TTAA 1 cut(s) 535
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 71, 295, 341, 428
NaeI GCCGGC 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 335, 422, 488
NlaIV GGNNCC 2 cut(s) 221, 316
NmuCI GTSAC 2 cut(s) 266, 307
NruI TCGCGA 1 cut(s) 498
NspI RCATGY 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 2 cut(s) 297, 346
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PshAI GACNNNNGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 221, 316
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 2 cut(s) 221, 316
RsaNI GTAC 2 cut(s) 220, 315
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 2 cut(s) 296, 345
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 408
SetI ASST 8 cut(s) 52, 60, 76, 277, 388, 398, 441, 459
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 190
SgrAI CRCCGGYG 1 cut(s) 119
Sse9I AATT 1 cut(s) 503
SsiI CCGC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 89, 194
TaqII GACCGA 1 cut(s) 482
TasI AATT 1 cut(s) 503
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 2 cut(s) 266, 307
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 266, 307
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.