Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

36439044 .. 36441309

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19551

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCATTGGAATCATACGAGTTCTCAGATGCAGCAACTGCTGTTTATGCTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGAGACCGTCAAACCATACTTTTCTGGTAACGATCCAAAGTTTGCAACAGAGAGGGGTTTTACACGAGACACTCTGTGGGTATGTCTTGACAATGGCCTGAGGTTACTTCATCCTTTCATGCCATATGTGACAGAAGAACTGTGGCAACGTCTGCCGTCACCAGGGGATTACAAAAGGGCATCATCAATTATGATGAGCGATTACCCATTGATCATAGAGAGCTGGAAAAATGAAAGGGTGGAGTTTGATATGTCTCTTATTGAGTTGGTTGTGAAGTCTCTCCGATCTCTTGCCCAGGGAAGTCGTGAAAGGAGACAAGGTTTTGTGCTTTGTAGAGCAAGTTTGGGGAAGCGCGACCGGGAGGCAATATGGAACCATCAACTGGAAATTAAAACGCTTGCTAATGTGTCGTCTCTGACGGTAATCGATGAGAACAATGCTGCTCCAACTAGATGTGCTGTGTCTGTTGTGAATGAAAATCTTTCTGTCTATTTCAAGCTTCATGCATCTGGTTCTCCAGAAACAGATAGTGAAAAGATCCGGAAAAGGATTGAATACATTACATGCGATCGTGAGAGGCTGTCGAAGATATTGAATATGCTTGCTGCTCACAAAGATAAGGTCCCTGAGAAGGTTTCAAGAGATACTGCTGGCAAGCTGGAATCCCTTGAGAAGGAAAAGTCAGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

258

Amino Acids

29.67

Weight (kDa)

6.47

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_1	PF08264	2 - 125	2.4e-25	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	624
AclWI	GGATC	2 cut(s)	110, 616
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	4 cut(s)	245, 466, 715, 757
AgsI	TTSAA	4 cut(s)	580, 638, 679, 723
AjnI	CCWGG	2 cut(s)	244, 378
AluBI	AGCT	4 cut(s)	67, 306, 583, 742
AluI	AGCT	4 cut(s)	67, 306, 583, 742
Alw26I	GTCTC	6 cut(s)	80, 144, 342, 366, 391, 501
AlwI	GGATC	2 cut(s)	110, 616
AlwNI	CAGNNNCTG	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	624
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	32, 524, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	690, 722
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	706
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	706
AxyI	CCTNAGG	1 cut(s)	182
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	44, 511, 676
BccI	CCATC	1 cut(s)	468
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	246, 380
BclI	TGATCA	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	6 cut(s)	80, 144, 342, 366, 391, 501
BfaI	CTAG	1 cut(s)	534
BisI	GCNGC	3 cut(s)	33, 525, 690
BlsI	GCNGC	3 cut(s)	34, 526, 691
Bme1390I	CCNGG	3 cut(s)	246, 380, 443
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	2 cut(s)	458, 708
BmrFI	CCNGG	3 cut(s)	246, 380, 443
BmsI	GCATC	3 cut(s)	19, 272, 599
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	245, 378, 379
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 466, 715, 757
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	246, 380
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	245, 378, 379
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	4 cut(s)	245, 466, 715, 757
BseMII	CTCAG	3 cut(s)	39, 173, 702
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	44, 511, 676
Bsh1236I	CGCG	1 cut(s)	438
Bsh1285I	CGRYCG	2 cut(s)	442, 655
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	510
BsiEI	CGRYCG	2 cut(s)	442, 655
BsiSI	CCGG	2 cut(s)	442, 625
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	4 cut(s)	245, 466, 715, 757
BsmAI	GTCTC	6 cut(s)	80, 144, 342, 366, 391, 501
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	115, 294, 368, 621, 652
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	38, 174, 703
BspDI	ATCGAT	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	624
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	458, 708
BspPI	GGATC	2 cut(s)	110, 616
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	245, 378, 379
BssMI	GATC	5 cut(s)	115, 294, 368, 621, 652
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	246, 380
Bst4CI	ACNGT	3 cut(s)	91, 225, 505
BstAPI	GCANNNNNTGC	2 cut(s)	38, 235
BstC8I	GCNNGC	4 cut(s)	483, 687, 736, 740
BstDEI	CTNAG	3 cut(s)	25, 182, 711
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	118, 297, 371, 624, 655
BstMAI	GTCTC	6 cut(s)	80, 144, 342, 366, 391, 501
BstMBI	GATC	5 cut(s)	115, 294, 368, 621, 652
BstMCI	CGRYCG	2 cut(s)	442, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 64, 235
BstNI	CCWGG	2 cut(s)	246, 380
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	3 cut(s)	244, 378, 441
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	3 cut(s)	44, 511, 676
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
Bsu15I	ATCGAT	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	4 cut(s)	483, 687, 736, 740
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	706
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	202, 587, 648
CviJI	RGCY	6 cut(s)	67, 180, 306, 583, 664, 742
CviKI_1	RGCY	6 cut(s)	67, 180, 306, 583, 664, 742
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	25, 182, 711
DpnI	GATC	5 cut(s)	117, 296, 370, 623, 654
DpnII	GATC	5 cut(s)	115, 294, 368, 621, 652
DraIII	CACNNNGTG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	706
Eco81I	CCTNAGG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	2 cut(s)	244, 378
EcoT22I	ATGCAT	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	3 cut(s)	205, 590, 651
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	3 cut(s)	201, 586, 647
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	33, 525, 690
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	33, 525, 690
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	3 cut(s)	33, 525, 690
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	442, 625
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	205, 590, 651
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	11, 746
HpaII	CCGG	2 cut(s)	442, 625
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	28, 368, 501
Hpy188III	TCNNGA	7 cut(s)	170, 389, 602, 625, 656, 723, 774
HpyAV	CCTTC	2 cut(s)	709, 751
HpyCH4III	ACNGT	3 cut(s)	91, 225, 505
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	32, 128, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 64, 235
HpyF3I	CTNAG	3 cut(s)	25, 182, 711
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	205, 590, 651
HspAI	GCGC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	115, 294, 368, 621, 652
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	44, 511, 676
LweI	GCATC	3 cut(s)	19, 272, 599
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	4 cut(s)	110, 186, 211, 240
MalI	GATC	5 cut(s)	117, 296, 370, 623, 654
MboI	GATC	5 cut(s)	115, 294, 368, 621, 652
MboII	GAAGA	3 cut(s)	70, 230, 682
MflI	RGATCY	1 cut(s)	621
MluCI	AATT	2 cut(s)	270, 471
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	4 cut(s)	129, 177, 439, 654
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	624
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	442, 625
MspR9I	CCNGG	3 cut(s)	246, 380, 443
MvaI	CCWGG	2 cut(s)	246, 380
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 64, 235
NciI	CCSGG	1 cut(s)	443
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	5 cut(s)	115, 294, 368, 621, 652
NlaIII	CATG	3 cut(s)	205, 590, 651
NlaIV	GGNNCC	2 cut(s)	458, 708
NmuCI	GTSAC	2 cut(s)	211, 240
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	651
PasI	CCCWGGG	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	11, 746
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	34, 526, 691
Ple19I	CGATCG	1 cut(s)	655
PpuMI	RGGWCCY	1 cut(s)	706
Psp5II	RGGWCCY	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	244, 378
PspGI	CCWGG	2 cut(s)	244, 378
PspN4I	GGNNCC	2 cut(s)	458, 708
PspPI	GGNCC	1 cut(s)	706
PspPPI	RGGWCCY	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	621
PvuI	CGATCG	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	3 cut(s)	33, 525, 690
Sau3AI	GATC	5 cut(s)	115, 294, 368, 621, 652
Sau96I	GGNCC	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	246, 380, 443
SetI	ASST	9 cut(s)	69, 188, 235, 308, 406, 585, 708, 720, 744
SfaNI	GCATC	3 cut(s)	19, 272, 599
SinI	GGWCC	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	2 cut(s)	270, 471
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	3 cut(s)	244, 378, 441
TaaI	ACNGT	3 cut(s)	91, 225, 505
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	510, 668
TasI	AATT	2 cut(s)	270, 471
TfiI	GAWTC	2 cut(s)	11, 746
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	211, 240
TseI	GCWGC	3 cut(s)	32, 524, 689
Tsp45I	GTSAC	2 cut(s)	211, 240
TspDTI	ATGAA	6 cut(s)	70, 182, 190, 330, 573, 575
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	706
XagI	CCTNNNNNAGG	1 cut(s)	755
XceI	RCATGY	1 cut(s)	651
XspI	CTAG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.