Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

38095108 .. 38095528

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATTCGTGATGCACATGGGCGTAAAATGTCAAAATCCTTGGGGAATGTCATTGATCCACTTGATGTGATAAATGGTGTTGAACTTGAAGGTCTACAGAAGAAGCTTTTAGAGGGAAATTTGGATGCCAAGGAAGTAGCTGTCTCGGAAGAAGGGCTTAAGAAGGACTTTCCTAAGGGGATTAGGGAATGTGGTGCAGATGCTCTCCGTTTTGCTCTAGTGTCTTACACTGCTCAGCATGATAAGATATATCTGGATATCAAAAGGGTGGAGGGCTACAAAAGCTGGTGTAATAAATTGTGGAATGTAGTAAGGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

8.55

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	118
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	83, 89
AluBI	AGCT	3 cut(s)	106, 140, 285
AluI	AGCT	3 cut(s)	106, 140, 285
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	234
BmsI	GCATC	2 cut(s)	115, 190
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	39, 129
Bse21I	CCTNAGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	39, 129
BseGI	GGATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	55
Bsp1720I	GCTNAGC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	39, 129
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	39, 129
BstAFI	CTTAAG	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	174, 234
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
CviAII	CATG	2 cut(s)	17, 239
CviJI	RGCY	5 cut(s)	106, 140, 157, 276, 285
CviKI_1	RGCY	5 cut(s)	106, 140, 157, 276, 285
DdeI	CTNAG	2 cut(s)	174, 234
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	39, 129
Eco32I	GATATC	1 cut(s)	259
Eco81I	CCTNAGG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	39, 129
ErhI	CCWWGG	2 cut(s)	39, 129
FaeI	CATG	2 cut(s)	20, 242
FaiI	YATR	3 cut(s)	18, 240, 250
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 152, 184
FatI	CATG	2 cut(s)	16, 238
FblI	GTMKAC	1 cut(s)	94
FokI	GGATG	1 cut(s)	137
FspBI	CTAG	1 cut(s)	218
Hin1II	CATG	2 cut(s)	20, 242
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	148, 323
Hpy188III	TCNNGA	2 cut(s)	8, 254
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	83, 146, 157
HpyCH4V	TGCA	2 cut(s)	14, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	174, 234
Hsp92II	CATG	2 cut(s)	20, 242
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	239, 271
LweI	GCATC	2 cut(s)	115, 190
MaeI	CTAG	1 cut(s)	218
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	112, 161
MluCI	AATT	2 cut(s)	118, 296
MnlI	CCTC	2 cut(s)	106, 265
MseI	TTAA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	20, 242
PfeI	GAWTC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	55
SetI	ASST	5 cut(s)	94, 108, 142, 287, 317
SfaNI	GCATC	2 cut(s)	115, 190
SfcI	CTRYAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	118, 296
SspMI	CTAG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	39, 129
TasI	AATT	2 cut(s)	118, 296
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	94
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.