Rroxscaffold_3G00228490

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
12942693 .. 12947400
4708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228490.1

Sequence Viewer

Length: 267 bp
ATGAAAAGCTTTCTGTTTATCTCATGCTTCATGCATCCGGTTCTTCAGAAACAGATCTTGAAAAGATCCGGAAAAGGATTGAATACATACATTACACGGGAACATGAGAGGCTATCGAAGAAATTGAATATGCTTGCTGCTAATGAAGATAAGGTCCCCGAGAAGGTTACAAGAGATACTGCTGACAAGCTGGAATCCCTTGAGAAGGAAAAGTTGTCTCTTGAAGAGTCGATTCAACTTATGGAAACACAGGAGATGAACTTTTAA

Protein Analysis

88

Amino Acids

10.32

Weight (kDa)

7.86

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 68
AclWI GGATC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 163, 205
AgsI TTSAA 5 cut(s) 61, 82, 127, 224, 236
AluBI AGCT 2 cut(s) 9, 190
AluI AGCT 2 cut(s) 9, 190
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 222
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 221
BsaWI WCCGGW 2 cut(s) 37, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 205
BseAI TCCGGA 1 cut(s) 68
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 163, 205
BseXI GCAGC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 38, 69
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 163, 205
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 2 cut(s) 54, 65
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 60
BssMI GATC 2 cut(s) 54, 65
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 57, 68
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 54, 65
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 54, 65
BstYI RGATCY 2 cut(s) 54, 65
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 3 cut(s) 24, 31, 104
CviJI RGCY 3 cut(s) 9, 112, 190
CviKI_1 RGCY 3 cut(s) 9, 112, 190
DpnI GATC 2 cut(s) 56, 67
DpnII GATC 2 cut(s) 54, 65
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 36
FaeI CATG 3 cut(s) 27, 34, 107
FaiI YATR 6 cut(s) 25, 32, 88, 105, 131, 242
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 23, 30, 103
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HapII CCGG 2 cut(s) 38, 69
Hin1II CATG 3 cut(s) 27, 34, 107
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 194, 227, 232
HpaII CCGG 2 cut(s) 38, 69
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 58, 69, 221
HpyAV CCTTC 2 cut(s) 157, 199
HpyCH4V TGCA 1 cut(s) 34
Hsp92II CATG 3 cut(s) 27, 34, 107
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 2 cut(s) 54, 65
LpnPI CCDG 4 cut(s) 51, 82, 176, 236
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 56, 67
MboI GATC 2 cut(s) 54, 65
MboII GAAGA 4 cut(s) 35, 130, 158, 236
MflI RGATCY 2 cut(s) 54, 65
MluCI AATT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 36
MroI TCCGGA 1 cut(s) 68
MseI TTAA 1 cut(s) 265
MspI CCGG 2 cut(s) 38, 69
NdeII GATC 2 cut(s) 54, 65
NlaIII CATG 3 cut(s) 27, 34, 107
NlaIV GGNNCC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 36
PfeI GAWTC 2 cut(s) 194, 232
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 2 cut(s) 54, 65
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 54, 65
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 236
SetI ASST 4 cut(s) 11, 156, 168, 192
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 122
TaqI TCGA 2 cut(s) 116, 230
TasI AATT 1 cut(s) 122
TfiI GAWTC 2 cut(s) 194, 232
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 17, 19, 159
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.