Rorug06G0447200

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
57790515 .. 57793889
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0447200.1

Sequence Viewer

Length: 1311 bp
ATGGCAACAAAACCAAAAAATAGTACTACTCCTGGGAGGGAGAGGAGAAGTAGCACATCACCAGCTAGCCTCACCAAAAGACCCACAAAACCAACTACTCCTGATAAACCTTCTTCAACCTCAAACTCATCATCAACAGCAAAACCAGTGCCAAACTATTTGAGATCAACCGCAAGCTCATCACGCCAGACTCCTTCTTTGACCAAGTCCAGGTCATTAAAGAAACATCATGTCTCTGATAATCAAGACTCCAACTCCCCAAAGCCTACACTAAATAGAAGAAGATCCTTTGACAAGCCACCATCACCTTCAGGACCACGGAAAATCATCTCCCCAGGAAGAGAGTCAAGAGACCCAGCACTTCGATCTAAATCTTTTTCAGTTAAAAGCATCTCAAATGCTCCAAAACCCACCAGTAAATCTGTATCTGGAACCAAACCACAGGCTTCGTTTGCAAAGAGTAGTGGCACTAGTTTGAGGAGAAGCACTAGTGGTATCACTTCTGGTTCAAGTAAGAAGGAAAGTAGAAGTAGTAGAAGTACTACTGGTAGTTCAAGAGCTCCGAGGAGTCATGACATAACACAAATTCTTAATCTTGAAACTAATTTGGAAGCTTTAGATCATCATGAAGTTGGAGAGGTGGATAAGATTGAGAGTATTGAGGAGGACAACAGTCAAGACCTTCCGGACCCTAAATTAGCTGAAGAAGATCTTGATGATCAGCAGCAACATCATGCTTCAGATACTGATCAAGCTAATGGTCATGACACTACTTCTGTTAAAGATGCAGCAGAGGAATCAAAAGCAAATGTGGATGTCAATAATGAAGAAGTTACTCAAGCAGAGAAAAATATTGATGGTCACCATGATCAAGTTGAAGAGGTTAATCACATTAGCAAAGATCATGAAAGCAATGACATTGATCACCACCCAGAAGAGGGTTCGGGTCTGACAAGCGAGGAAACAATAGCTGAGGAGGTGATCAAAGAAAAGAAAGAAGATGAAAACAAGAATGAGGTGGATATGGAAGTCGTTGATGGAGGAAGCAATGAGCTTGATCCAAAGGAAGGGCAAGATGGAGATATCAAAGAAGAAGCAAAGCCTGAGGAACCAGAGGTAACAGAAACGCCGCAAGCGGCTGCTGCTACTACAGGGAATAACAAGAAGGAGGCGGCTCCTGCTTACAATGATGTGATTGAGGAGACTGCGAGTAAGCTGATGGCCCAAGAGAAGAGGAGGAACAAGGTCAAAGCTTTGGTTGGGGCTTTTGAGACTGTCATAGATCATGAATCAGGATCCAAATTAAATTAA

Protein Analysis

436

Amino Acids

47.34

Weight (kDa)

5.56

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 325 - 427 6e-13 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 4 cut(s) 171, 1130, 1136, 1172
AclWI GGATC 4 cut(s) 279, 1052, 1290, 1303
AcsI RAATTY 1 cut(s) 585
AcuI CTGAAG 3 cut(s) 294, 723, 723
AfaI GTAC 2 cut(s) 25, 541
AfiI CCNNNNNNNGG 4 cut(s) 210, 937, 938, 1067
AgsI TTSAA 5 cut(s) 117, 510, 555, 599, 878
AhlI ACTAGT 2 cut(s) 470, 488
AjnI CCWGG 3 cut(s) 31, 209, 334
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 4 cut(s) 238, 345, 1196, 1265
AlwI GGATC 4 cut(s) 279, 1052, 1290, 1303
AlwNI CAGNNNCTG 1 cut(s) 746
Aor13HI TCCGGA 1 cut(s) 685
AoxI GGCC 1 cut(s) 1221
ApeKI GCWGC 4 cut(s) 724, 788, 1139, 1142
ApoI RAATTY 1 cut(s) 585
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspS9I GGNCC 3 cut(s) 314, 688, 1222
AsuHPI GGTGA 6 cut(s) 51, 64, 297, 854, 917, 991
AsuNHI GCTAGC 1 cut(s) 65
AvaII GGWCC 2 cut(s) 314, 688
AxyI CCTNAGG 1 cut(s) 1104
BamHI GGATCC 1 cut(s) 1295
BanII GRGCYC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 562
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 4 cut(s) 736, 800, 1126, 1129
BccI CCATC 5 cut(s) 310, 851, 1031, 1070, 1213
BciT130I CCWGG 3 cut(s) 33, 211, 336
BclI TGATCA 5 cut(s) 718, 748, 868, 922, 981
BcoDI GTCTC 4 cut(s) 238, 345, 1196, 1265
BcuI ACTAGT 2 cut(s) 470, 488
BfaI CTAG 3 cut(s) 66, 471, 489
BfmI CTRYAG 1 cut(s) 1149
BglII AGATCT 1 cut(s) 709
BisI GCNGC 7 cut(s) 725, 789, 1130, 1137, 1140, 1143, 1173
BlsI GCNGC 7 cut(s) 726, 790, 1131, 1138, 1141, 1144, 1174
BmcAI AGTACT 2 cut(s) 25, 541
Bme1390I CCNGG 3 cut(s) 33, 211, 336
Bme18I GGWCC 2 cut(s) 314, 688
BmgT120I GGNCC 3 cut(s) 314, 688, 1222
BmiI GGNNCC 5 cut(s) 433, 690, 1110, 1176, 1297
BmrFI CCNGG 3 cut(s) 33, 211, 336
BmsI GCATC 2 cut(s) 399, 775
BmtI GCTAGC 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 972
BpuEI CTTGAG 1 cut(s) 822
BsaBI GATNNNNATC 2 cut(s) 370, 747
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 4 cut(s) 32, 317, 334, 563
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 937, 938, 1067
Bse1I ACTGG 3 cut(s) 146, 414, 550
Bse21I CCTNAGG 1 cut(s) 1104
Bse3DI GCAATG 2 cut(s) 919, 1054
Bse8I GATNNNNATC 2 cut(s) 370, 747
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 3 cut(s) 33, 211, 336
BseDI CCNNGG 4 cut(s) 32, 317, 334, 563
BseGI GGATG 1 cut(s) 820
BseJI GATNNNNATC 2 cut(s) 370, 747
BseLI CCNNNNNNNGG 4 cut(s) 210, 937, 938, 1067
BseMI GCAATG 2 cut(s) 919, 1054
BseMII CTCAG 2 cut(s) 963, 1095
BseNI ACTGG 3 cut(s) 146, 414, 550
BseRI GAGGAG 7 cut(s) 58, 493, 580, 677, 989, 1214, 1249
BseXI GCAGC 4 cut(s) 736, 800, 1126, 1129
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 686
BslI CCNNNNNNNGG 4 cut(s) 210, 937, 938, 1067
BsmAI GTCTC 4 cut(s) 238, 345, 1196, 1265
BsnI GGCC 1 cut(s) 1223
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 562
Bsp13I TCCGGA 1 cut(s) 685
BspACI CCGC 4 cut(s) 171, 1130, 1136, 1172
BspANI GGCC 1 cut(s) 1223
BspCNI CTCAG 2 cut(s) 964, 1096
BspEI TCCGGA 1 cut(s) 685
BspHI TCATGA 5 cut(s) 571, 625, 763, 904, 1285
BspLI GGNNCC 5 cut(s) 433, 690, 1110, 1176, 1297
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 4 cut(s) 279, 1052, 1290, 1303
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 2 cut(s) 919, 1054
BsrI ACTGG 3 cut(s) 146, 414, 550
BssECI CCNNGG 4 cut(s) 32, 317, 334, 563
Bst2UI CCWGG 3 cut(s) 33, 211, 336
Bst4CI ACNGT 2 cut(s) 674, 1276
Bst6I CTCTTC 4 cut(s) 334, 873, 930, 1226
BstC8I GCNNGC 3 cut(s) 67, 175, 1134
BstDEI CTNAG 2 cut(s) 972, 1104
BstDSI CCRYGG 1 cut(s) 317
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 1 cut(s) 820
BstMAI GTCTC 4 cut(s) 238, 345, 1196, 1265
BstMWI GCNNNNNNNGC 4 cut(s) 183, 452, 1142, 1178
BstNI CCWGG 3 cut(s) 33, 211, 336
BstPAI GACNNNNGTC 1 cut(s) 672
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 31, 209, 334
BstSFI CTRYAG 1 cut(s) 1149
BstV1I GCAGC 4 cut(s) 736, 800, 1126, 1129
BstX2I RGATCY 3 cut(s) 284, 709, 1295
BstYI RGATCY 3 cut(s) 284, 709, 1295
Bsu36I CCTNAGG 1 cut(s) 1104
BsuRI GGCC 1 cut(s) 1223
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 67, 175, 1134
CaiI CAGNNNCTG 1 cut(s) 746
CciI TCATGA 5 cut(s) 571, 625, 763, 904, 1285
Cfr13I GGNCC 3 cut(s) 314, 688, 1222
Csp6I GTAC 2 cut(s) 24, 540
CviAII CATG 8 cut(s) 230, 572, 626, 734, 764, 866, 905, 1286
CviQI GTAC 2 cut(s) 24, 540
DdeI CTNAG 2 cut(s) 972, 1104
Eam1104I CTCTTC 4 cut(s) 334, 873, 930, 1226
EarI CTCTTC 4 cut(s) 334, 873, 930, 1226
Ecl136II GAGCTC 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 314, 688
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 3 cut(s) 294, 723, 723
Eco81I CCTNAGG 1 cut(s) 1104
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 1 cut(s) 560
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 3 cut(s) 31, 209, 334
EcoRV GATATC 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 562
FaeI CATG 8 cut(s) 233, 575, 629, 737, 767, 869, 908, 1289
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FatI CATG 8 cut(s) 229, 571, 625, 733, 763, 865, 904, 1285
FbaI TGATCA 5 cut(s) 718, 748, 868, 922, 981
Fnu4HI GCNGC 7 cut(s) 725, 789, 1130, 1137, 1140, 1143, 1173
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 7 cut(s) 725, 789, 1130, 1137, 1140, 1143, 1173
FspBI CTAG 3 cut(s) 66, 471, 489
GluI GCNGC 7 cut(s) 725, 789, 1130, 1137, 1140, 1143, 1173
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 1223
HapII CCGG 1 cut(s) 686
Hin1II CATG 8 cut(s) 233, 575, 629, 737, 767, 869, 908, 1289
HindIII AAGCTT 2 cut(s) 612, 1251
HinfI GANTC 6 cut(s) 190, 248, 344, 568, 797, 1289
HpaII CCGG 1 cut(s) 686
HphI GGTGA 6 cut(s) 51, 64, 297, 854, 917, 991
Hpy188I TCNGA 4 cut(s) 238, 564, 742, 951
HpyAV CCTTC 7 cut(s) 120, 204, 318, 511, 692, 1061, 1159
HpyCH4III ACNGT 2 cut(s) 674, 1276
HpyCH4V TGCA 2 cut(s) 455, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 452, 1142, 1178
HpyF3I CTNAG 2 cut(s) 972, 1104
Hsp92II CATG 8 cut(s) 233, 575, 629, 737, 767, 869, 908, 1289
Kpn2I TCCGGA 1 cut(s) 685
Ksp22I TGATCA 5 cut(s) 718, 748, 868, 922, 981
LmnI GCTCC 3 cut(s) 406, 565, 1180
Lsp1109I GCAGC 4 cut(s) 736, 800, 1126, 1129
LweI GCATC 2 cut(s) 399, 775
MaeI CTAG 3 cut(s) 66, 471, 489
MaeIII GTNAC 3 cut(s) 832, 860, 1117
MflI RGATCY 3 cut(s) 284, 709, 1295
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 5 cut(s) 585, 604, 695, 1301, 1306
MlyI GAGTC 4 cut(s) 184, 242, 353, 577
MmeI TCCRAC 2 cut(s) 276, 613
MroI TCCGGA 1 cut(s) 685
MseI TTAA 7 cut(s) 218, 384, 591, 780, 885, 1304, 1309
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 3 cut(s) 33, 211, 336
MvaI CCWGG 3 cut(s) 33, 211, 336
MwoI GCNNNNNNNGC 4 cut(s) 183, 452, 1142, 1178
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 8 cut(s) 233, 575, 629, 737, 767, 869, 908, 1289
NlaIV GGNNCC 5 cut(s) 433, 690, 1110, 1176, 1297
NmuCI GTSAC 1 cut(s) 860
PagI TCATGA 5 cut(s) 571, 625, 763, 904, 1285
PfeI GAWTC 2 cut(s) 797, 1289
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 7 cut(s) 726, 790, 1131, 1138, 1141, 1144, 1174
PleI GAGTC 4 cut(s) 184, 242, 352, 576
PpsI GAGTC 4 cut(s) 184, 242, 352, 576
PshAI GACNNNNGTC 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 562
Psp6I CCWGG 3 cut(s) 31, 209, 334
PspEI GGTNACC 1 cut(s) 860
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 3 cut(s) 31, 209, 334
PspN4I GGNNCC 5 cut(s) 433, 690, 1110, 1176, 1297
PspPI GGNCC 3 cut(s) 314, 688, 1222
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 3 cut(s) 284, 709, 1295
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 2 cut(s) 25, 541
RsaNI GTAC 2 cut(s) 24, 540
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 7 cut(s) 218, 384, 591, 780, 885, 1304, 1309
SatI GCNGC 7 cut(s) 725, 789, 1130, 1137, 1140, 1143, 1173
Sau96I GGNCC 3 cut(s) 314, 688, 1222
ScaI AGTACT 2 cut(s) 25, 541
SchI GAGTC 4 cut(s) 184, 242, 353, 577
ScrFI CCNGG 3 cut(s) 33, 211, 336
SduI GDGCHC 1 cut(s) 562
SfaNI GCATC 2 cut(s) 399, 775
SfcI CTRYAG 1 cut(s) 1149
SinI GGWCC 2 cut(s) 314, 688
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
SpeI ACTAGT 2 cut(s) 470, 488
Sse9I AATT 5 cut(s) 585, 604, 695, 1301, 1306
SsiI CCGC 4 cut(s) 171, 1130, 1136, 1172
SspI AATATT 1 cut(s) 853
SspMI CTAG 3 cut(s) 66, 471, 489
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 31, 209, 334
TaaI ACNGT 2 cut(s) 674, 1276
TaqI TCGA 1 cut(s) 364
TasI AATT 5 cut(s) 585, 604, 695, 1301, 1306
TatI WGTACW 2 cut(s) 23, 539
TauI GCSGC 3 cut(s) 1132, 1139, 1175
TfiI GAWTC 2 cut(s) 797, 1289
Tru1I TTAA 7 cut(s) 218, 384, 591, 780, 885, 1304, 1309
Tru9I TTAA 7 cut(s) 218, 384, 591, 780, 885, 1304, 1309
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 4 cut(s) 724, 788, 1139, 1142
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 5 cut(s) 642, 840, 921, 1017, 1302
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 314, 688
XapI RAATTY 1 cut(s) 585
XspI CTAG 3 cut(s) 66, 471, 489
ZrmI AGTACT 2 cut(s) 25, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.