pycom03g00060

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
36417 .. 36737
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00060.1

Sequence Viewer

Length: 321 bp
ATGGATTATATTGATATTCGAGATACGACATTACTCAGGTTTCCTGGATATGAGAACCCTGTTGAATTTGGCGTGTTAACTTCATTTGCTTACACTCTGGAGGAAGATTTTGGTGAGATTGTGGTGGGCACCACTAGAGTGGAAACTATGCTCGGTGATACTGCCATTGCTGTACATCCAAATGACGAGAGGTATAGACACCTTCATGAAAAACATGCCATCCATCCTTTCAATGGAAGAAGAATTCCTATAGTATGTGATGAAATTCTCGTTGATCCAGAGTTCGGGACTGGTGCTGTGAAGGTAAAGTTTAACATATAA

Protein Analysis

107

Amino Acids

12.09

Weight (kDa)

4.94

Isoelectric Point (pI)

23.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 3 cut(s) 65, 243, 264
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 233, 284
AgsI TTSAA 2 cut(s) 65, 232
AjnI CCWGG 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 137
AlwI GGATC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 65, 243, 264
AsuHPI GGTGA 2 cut(s) 125, 167
BaeGI GKGCMC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 128
BccI CCATC 2 cut(s) 227, 231
BciT130I CCWGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 284
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 175, 219, 223
BseLI CCNNNNNNNGG 2 cut(s) 233, 284
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 233, 284
BsmFI GGGAC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 175, 219, 223
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 139
BtsCI GGATG 3 cut(s) 175, 219, 223
CciI TCATGA 1 cut(s) 205
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 206, 215
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 209, 218
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 205, 214
FokI GGATG 3 cut(s) 162, 206, 210
FspBI CTAG 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 119
Hin1II CATG 2 cut(s) 209, 218
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HpaI GTTAAC 1 cut(s) 78
HphI GGTGA 2 cut(s) 125, 167
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 5 cut(s) 20, 98, 206, 278, 286
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 212, 295
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 2 cut(s) 209, 218
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 22, 30, 57, 72, 83, 276, 291
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 116, 249, 252
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 65, 243, 264
MnlI CCTC 2 cut(s) 94, 183
MseI TTAA 2 cut(s) 77, 312
MslI CAYNNNNRTG 3 cut(s) 137, 180, 204
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 209, 218
NlaIV GGNNCC 1 cut(s) 130
NspI RCATGY 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 137
PagI TCATGA 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 3 cut(s) 137, 180, 204
SaqAI TTAA 2 cut(s) 77, 312
Sau3AI GATC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 131
SetI ASST 4 cut(s) 41, 194, 204, 306
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 3 cut(s) 137, 180, 204
Sse9I AATT 3 cut(s) 65, 243, 264
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 43
TaqI TCGA 1 cut(s) 19
TasI AATT 3 cut(s) 65, 243, 264
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 2 cut(s) 77, 312
Tru9I TTAA 2 cut(s) 77, 312
TspDTI ATGAA 4 cut(s) 72, 194, 222, 276
XapI RAATTY 3 cut(s) 65, 243, 264
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.