Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

57233432 .. 57241371

Gene Structure 7940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3132 bp

ATGGACATCACAGTCATGGACGACAATTCATCGAAGAAGAAAAAGGAGGAAAAGGCAAGATTTCACGAACTGAAAAAGCAAAAGGCTTTAGAGAAAGCTTCCAAGCTTCAGGCACAAAAAGCTAATCCTACGAACAGTGAAAAGAAGAAACTTCGCAACGAGGACGCCGGCGACAATGCCAACCCTCCGACCCCAGTCGGCGAGAAGAAACGATTGTCTCCTCAAATGGCTAAACACTACAGTCCAAGTGATGTAGAGATGGCGTGGTACCCGTGGTGGGAGATACAAGGCTACTTTGTCGCAGACGCTAAAAGTCACAAACCTCCATTTGAAATGCCCCTGCCGCCTCCCAATGTGACTGGTGCCCTTCATTTAGGCCATGCTCTTACTGCTGCTATTCAGGACACTATTATTCGTTGGCGGAGAATGTCAGGTTATAATACCTTGTGGTTGCCTGGACTTGACCATGCTGGCATAGCAACACAGGTTGTTGTGGAAAAGAAGTTAATGCGTGAAAGCGGTAAAACCAGACATGATATCGGTCGCGAGGAATTTATCTCTAAAGTTTGGGATTGGAAAATTGAGTATGGGGGCACCATTTTACAGCAGCTACGTCGTTTGGGTGCTTCTTTAGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAAAGTTCAAAGGCTGTTGCAGAAGCTTTTGTTAGGCTACATAATCAAGGACTCATCTACAGGGATAATCGCATAGTGAACTGGGATTGTGTGTTGCGGACCGCAATATCTGATATTGAGGTGGATCCTCCAATTGAAATAAAAGAAAGGACACTATTAGAAGTTCCTGGATATGAGAACCCTGTTGAATTTGGTGTTTTGACTTTATTTGCATATCCTGTGGAAAAAGATTTAGGCGAGATAGTTGTAGCCACTACCCGAATAGAGACGATGCTTGGTGATACTGCTATTGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCATGGAAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAAGTGATGAAATTCTTGTTGATCCAGAGTTTGGGACTGGTGCTGTCAAGATTACCCCGGCCCATGATCCTAATGACTTTATGGTTGGGAAGCGCCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGATCATTTGAAGGGATGCCACGCTTCAGAGCCCGAGAGGCTGTGACTGATGCACTAAAGAAGAAGGGCCTCTTCAAAGAAACAAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAGTGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCTGATGATGAAAATAGGAAGCTGGAGATTATCCCAAGACAGTATACTGCTGACTGGAAGAGATGGCTTCATAACATTACTGATTGGTGTGTCTCGAGGCAACTTTGGTGGGGTCACCGTGTTCCAGCATGGTATGTTGTTTTTGAGGGTGATGACAACGAAGAATTTGGAAAAATTTTTGAGCGATGGGTGGTTGCTAGAAGTGAGGAAGAGGCTCAAGCATTGGCTGATCAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACTCAGATGTGCTTGACACGTGGTTTTCGTCTGGTCTTTTCCCATTGTTTGCATTGGGCTGGCCAGATGATACAGATGATTTCAAAACTTTTTATCCAAATTCAGTTGTTGAAACTGGGCACGACATTCTCTTTTTCTGGGTTGCTCGTATGGTGATGCTTGGAATTACATTGGGTGGTAATGTTCCCTTTACAAAGGTATACTTACACCCAATGGTTCGAGATGCACACGGGCGTAAAATGTCAAAGGGCTTGGGCAATGTCATTGACCCTGTTGACATAATAAATGGTATCACCCTAGAACGTCTACATGATAGACTTTTAGAGGGAAATCTGGACCCCAAGGAATTAGATAAGGCCAGAGAGGGACTATTAAAGGACTTCCCAGATGGTATTCCTGAGTGTGGTGCGGATGCTCTGCGGTTTTCTCTTATCTCTTACACTGCTCAGTCCGATAAGATAAATCTGGATATCCAAAGGGTTGTGGGTTACCGTCAGTGGTGTAACAAACTTTGGAATGCAGTGCGATTTGCTTTGGGTATACTTGGGGATGATTATGTTCCGCCCTCAAATGTAAATCCAGATGTGTTGCCATTCAGTTGCCGATGGATTCTCTCAGTGCTAAATGAAGCCATATCCAAAACTGTTATGTCATTGGAATCATACGAGTTCTCAGATGCAGCAACTGCTGTTTATGCTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGAGACTATCAAACCTTACTTTTCTGGCAATGATCCAAAGTTTGCAACAGAGAGGGGTTTTGCACGGGACACTCTGTGGGTATGTCTTGACAATGGCCTGAGGTTACTTCATCCTTTCATGCCATATGTGACAGAAGAACTGTGGCAACGTCTGCCGTCGCCAGGGCATTACAAAAGGGCATCATCAATTATGATGAGCGAGTACCCATTGATCATAGAGGGCTGGAAAAATGAAAGGGTGGAGCTTGATATGTCTCTTATTGAGTTGGTTGTGAAGTCTCTCCGATCTCTTGCCCAGGGAAGTCGTGAAAGGAGACAAGGTTATGTGCTTTGTAGAGCAAGTTTGGGAAAGCGCGACCAGGAGGCAATATGCAATCATCAACTGGAAATTAAAACGCTAGCTAATCTGTCGTCTTTGGCGGTAATCGATGAGAACCATGCTGCTCCAACTAGATGTGCGGTGTCTGTTGTGAACGAAAAGCTTTCTGTTTATCTCAAGCTTCATGCATCTGGTTCTTCAGAAACAGATCTTGAAAAGATCCGCAAAAGGATTGAATACATTACATGGGAACATGAGAGGCTATCGAAGAAATTGAATATTCTTGCTGCTAATGAAGATAAGGTCCCCGAGAAGGTTACAAGAGATACTGCTGACAAGCTGGAATCCCTTGAGAAGGAAAAGTTGTCTCTTGAAGAGTCGATTCAACTTATAGAAACACAGGAGATGAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

1043

Amino Acids

119.56

Weight (kDa)

5.97

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	89 - 711	7.6e-141	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1_2	PF13603	332 - 391	4e-07	Leucyl-tRNA synthetase, editing domain
Anticodon_1	PF08264	757 - 896	1.1e-30	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	3 cut(s)	267, 362, 593
AccB7I	CCANNNNNTGG	2 cut(s)	1022, 1073
AccI	GTMKAC	4 cut(s)	1442, 1866, 1972, 2206
AccII	CGCG	2 cut(s)	546, 2751
AclWI	GGATC	7 cut(s)	785, 798, 1058, 1103, 1204, 2423, 2929
AcoI	YGGCCR	1 cut(s)	1727
AcsI	RAATTY	8 cut(s)	551, 854, 1053, 1302, 1562, 1572, 1765, 3125
AcuI	CTGAAG	3 cut(s)	92, 1204, 2898
AcvI	CACGTG	1 cut(s)	1686
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	2472
AfaI	GTAC	4 cut(s)	269, 1355, 2375, 2600
AfiI	CCNNNNNNNGG	8 cut(s)	277, 1022, 1073, 1192, 2069, 2558, 3028, 3070
AflIII	ACRYGT	1 cut(s)	1683
AjnI	CCWGG	5 cut(s)	454, 832, 2557, 2691, 2754
Alw26I	GTCTC	8 cut(s)	222, 926, 1495, 2393, 2655, 2679, 2704, 3087
AlwI	GGATC	7 cut(s)	785, 798, 1058, 1103, 1204, 2423, 2929
AlwNI	CAGNNNCTG	1 cut(s)	2351
Ama87I	CYCGRG	3 cut(s)	1227, 1492, 3023
AoxI	GGCC	6 cut(s)	376, 1101, 1261, 1727, 2022, 2491
ApeKI	GCWGC	6 cut(s)	392, 607, 1365, 2345, 2837, 3002
ApoI	RAATTY	8 cut(s)	551, 854, 1053, 1302, 1562, 1572, 1765, 3125
Asp718I	GGTACC	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	1137, 2751
AspS9I	GGNCC	6 cut(s)	639, 765, 1102, 1261, 2002, 3019
AsuC2I	CCSGG	1 cut(s)	1100
AsuHPI	GGTGA	5 cut(s)	956, 1505, 1559, 1831, 1951
AsuNHI	GCTAGC	1 cut(s)	2794
AvaI	CYCGRG	3 cut(s)	1227, 1492, 3023
AvaII	GGWCC	4 cut(s)	639, 765, 2002, 3019
AxyI	CCTNAGG	1 cut(s)	2495
BaeGI	GKGCMC	3 cut(s)	367, 596, 1788
BalI	TGGCCA	1 cut(s)	1729
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	3 cut(s)	267, 362, 593
BanII	GRGCYC	1 cut(s)	1228
BbrPI	CACGTG	1 cut(s)	1686
BbsI	GAAGAC	1 cut(s)	2383
BbvI	GCAGC	6 cut(s)	379, 619, 1377, 2357, 2824, 2989
BccI	CCATC	7 cut(s)	253, 1020, 1166, 1455, 1578, 2048, 2265
BceAI	ACGGC	1 cut(s)	2536
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	5 cut(s)	456, 834, 2559, 2693, 2756
BclI	TGATCA	2 cut(s)	1627, 2607
BcnI	CCSGG	1 cut(s)	1100
BcoDI	GTCTC	8 cut(s)	222, 926, 1495, 2393, 2655, 2679, 2704, 3087
BfaI	CTAG	5 cut(s)	1311, 1596, 1964, 2795, 2847
BfmI	CTRYAG	2 cut(s)	238, 724
BfoI	RGCGCY	1 cut(s)	1138
BglI	GCCNNNNNGGC	1 cut(s)	1232
BglII	AGATCT	1 cut(s)	2923
BisI	GCNGC	7 cut(s)	344, 393, 608, 1366, 2346, 2838, 3003
BlsI	GCNGC	7 cut(s)	345, 394, 609, 1367, 2347, 2839, 3004
Bme1390I	CCNGG	6 cut(s)	456, 834, 1100, 2559, 2693, 2756
Bme18I	GGWCC	4 cut(s)	639, 765, 2002, 3019
BmeT110I	CYCGRG	3 cut(s)	1227, 1492, 3023
BmgT120I	GGNCC	6 cut(s)	639, 765, 1102, 1261, 2002, 3019
BmiI	GGNNCC	8 cut(s)	269, 364, 595, 641, 792, 1332, 2004, 3021
BmrFI	CCNGG	6 cut(s)	456, 834, 1100, 2559, 2693, 2756
BmrI	ACTGGG	4 cut(s)	188, 757, 1342, 1791
BmtI	GCTAGC	1 cut(s)	2798
BmuI	ACTGGG	4 cut(s)	188, 757, 1342, 1791
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	2383
BpmI	CTGGAG	1 cut(s)	1442
BpuEI	CTTGAG	4 cut(s)	1166, 1599, 2876, 3086
BpuMI	CCSGG	1 cut(s)	1100
Bsa29I	ATCGAT	1 cut(s)	2823
BsaAI	YACGTR	1 cut(s)	1686
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	6 cut(s)	272, 1098, 2007, 2558, 2691, 2692
BsaXI	ACNNNNNCTCC	2 cut(s)	2701, 2731
Bsc4I	CCNNNNNNNGG	8 cut(s)	277, 1022, 1073, 1192, 2069, 2558, 3028, 3070
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	9 cut(s)	194, 364, 752, 1084, 1186, 1348, 1457, 1786, 2784
Bse21I	CCTNAGG	1 cut(s)	2495
Bse3DI	GCAATG	2 cut(s)	1930, 2431
BseBI	CCWGG	5 cut(s)	456, 834, 2559, 2693, 2756
BseCI	ATCGAT	1 cut(s)	2823
BseDI	CCNNGG	6 cut(s)	272, 1098, 2007, 2558, 2691, 2692
BseGI	GGATG	7 cut(s)	667, 964, 1012, 1215, 2083, 2221, 2506
BseLI	CCNNNNNNNGG	8 cut(s)	277, 1022, 1073, 1192, 2069, 2558, 3028, 3070
BseMI	GCAATG	2 cut(s)	1930, 2431
BseMII	CTCAG	6 cut(s)	1683, 2055, 2126, 2295, 2352, 2486
BseNI	ACTGG	9 cut(s)	194, 364, 752, 1084, 1186, 1348, 1457, 1786, 2784
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	3 cut(s)	367, 596, 1788
BseXI	GCAGC	6 cut(s)	379, 619, 1377, 2357, 2824, 2989
Bsh1236I	CGCG	2 cut(s)	546, 2751
Bsh1285I	CGRYCG	1 cut(s)	544
BshFI	GGCC	6 cut(s)	378, 1103, 1263, 1729, 2024, 2493
BshNI	GGYRCC	3 cut(s)	267, 362, 593
BshVI	ATCGAT	1 cut(s)	2823
BsiEI	CGRYCG	1 cut(s)	544
BsiHKCI	CYCGRG	3 cut(s)	1227, 1492, 3023
BsiSI	CCGG	2 cut(s)	168, 1100
BslFI	GGGAC	5 cut(s)	625, 1090, 2046, 2477, 3005
BslI	CCNNNNNNNGG	8 cut(s)	277, 1022, 1073, 1192, 2069, 2558, 3028, 3070
BsmAI	GTCTC	8 cut(s)	222, 926, 1495, 2393, 2655, 2679, 2704, 3087
BsmBI	CGTCTC	1 cut(s)	926
BsmFI	GGGAC	5 cut(s)	625, 1090, 2046, 2477, 3005
BsmI	GAATGC	1 cut(s)	2188
BsnI	GGCC	6 cut(s)	378, 1103, 1263, 1729, 2024, 2493
BsoBI	CYCGRG	3 cut(s)	1227, 1492, 3023
Bsp1286I	GDGCHC	4 cut(s)	367, 596, 1228, 1788
Bsp68I	TCGCGA	1 cut(s)	546
BspANI	GGCC	6 cut(s)	378, 1103, 1263, 1729, 2024, 2493
BspCNI	CTCAG	6 cut(s)	1682, 2056, 2125, 2294, 2351, 2487
BspDI	ATCGAT	1 cut(s)	2823
BspFNI	CGCG	2 cut(s)	546, 2751
BspLI	GGNNCC	8 cut(s)	269, 364, 595, 641, 792, 1332, 2004, 3021
BspOI	GCTAGC	1 cut(s)	2798
BspPI	GGATC	7 cut(s)	785, 798, 1058, 1103, 1204, 2423, 2929
BspT107I	GGYRCC	3 cut(s)	267, 362, 593
BsrDI	GCAATG	2 cut(s)	1930, 2431
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	9 cut(s)	194, 364, 752, 1084, 1186, 1348, 1457, 1786, 2784
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	6 cut(s)	272, 1098, 2007, 2558, 2691, 2692
BssNAI	GTATAC	3 cut(s)	1443, 1867, 2207
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	2007
Bst1107I	GTATAC	3 cut(s)	1443, 1867, 2207
Bst2UI	CCWGG	5 cut(s)	456, 834, 2559, 2693, 2756
Bst4CI	ACNGT	8 cut(s)	13, 137, 242, 1440, 1517, 2159, 2311, 2538
Bst6I	CTCTTC	4 cut(s)	1271, 1451, 1602, 3084
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	2351, 2548
BstBAI	YACGTR	1 cut(s)	1686
BstC8I	GCNNGC	4 cut(s)	169, 472, 1727, 2796
BstDEI	CTNAG	7 cut(s)	1298, 1669, 2064, 2112, 2281, 2338, 2495
BstDSI	CCRYGG	1 cut(s)	272
BstEII	GGTNACC	2 cut(s)	1511, 2153
BstENI	CCTNNNNNAGG	1 cut(s)	3068
BstF5I	GGATG	7 cut(s)	667, 964, 1012, 1215, 2083, 2221, 2506
BstFNI	CGCG	2 cut(s)	546, 2751
BstH2I	RGCGCY	1 cut(s)	1138
BstHHI	GCGC	2 cut(s)	1137, 2751
BstMAI	GTCTC	8 cut(s)	222, 926, 1495, 2393, 2655, 2679, 2704, 3087
BstMCI	CGRYCG	1 cut(s)	544
BstNI	CCWGG	5 cut(s)	456, 834, 2559, 2693, 2756
BstNSI	RCATGY	1 cut(s)	1007
BstPAI	GACNNNNGTC	1 cut(s)	194
BstPI	GGTNACC	2 cut(s)	1511, 2153
BstSCI	CCNGG	6 cut(s)	454, 832, 1098, 2557, 2691, 2754
BstSFI	CTRYAG	2 cut(s)	238, 724
BstSLI	GKGCMC	3 cut(s)	367, 596, 1788
BstUI	CGCG	2 cut(s)	546, 2751
BstV1I	GCAGC	6 cut(s)	379, 619, 1377, 2357, 2824, 2989
BstV2I	GAAGAC	1 cut(s)	2383
BstX2I	RGATCY	3 cut(s)	790, 2923, 2934
BstYI	RGATCY	3 cut(s)	790, 2923, 2934
BstZ17I	GTATAC	3 cut(s)	1443, 1867, 2207
Bsu15I	ATCGAT	1 cut(s)	2823
Bsu36I	CCTNAGG	1 cut(s)	2495
BsuRI	GGCC	6 cut(s)	378, 1103, 1263, 1729, 2024, 2493
BsuTUI	ATCGAT	1 cut(s)	2823
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	1597
BtsCI	GGATG	7 cut(s)	667, 964, 1012, 1215, 2083, 2221, 2506
BtsI	GCAGTG	3 cut(s)	966, 2106, 2193
BtsIMutI	CAGTG	7 cut(s)	142, 966, 1355, 2106, 2168, 2193, 2289
BtuMI	TCGCGA	1 cut(s)	546
Cac8I	GCNNGC	4 cut(s)	169, 472, 1727, 2796
CaiI	CAGNNNCTG	1 cut(s)	2351
CfoI	GCGC	2 cut(s)	1137, 2751
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	6 cut(s)	639, 765, 1102, 1261, 2002, 3019
ClaI	ATCGAT	1 cut(s)	2823
CpoI	CGGWCCG	1 cut(s)	765
CseI	GACGC	2 cut(s)	173, 314
Csp6I	GTAC	4 cut(s)	268, 1354, 2374, 2599
CspCI	CAANNNNNGTGG	2 cut(s)	1487, 1522
CspI	CGGWCCG	1 cut(s)	765
CviQI	GTAC	4 cut(s)	268, 1354, 2374, 2599
DdeI	CTNAG	7 cut(s)	1298, 1669, 2064, 2112, 2281, 2338, 2495
DraIII	CACNNNGTG	1 cut(s)	2472
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	1727
Eam1104I	CTCTTC	4 cut(s)	1271, 1451, 1602, 3084
EarI	CTCTTC	4 cut(s)	1271, 1451, 1602, 3084
EciI	GGCGGA	2 cut(s)	436, 2217
Eco130I	CCWWGG	1 cut(s)	2007
Eco24I	GRGCYC	1 cut(s)	1228
Eco32I	GATATC	2 cut(s)	538, 2137
Eco47I	GGWCC	4 cut(s)	639, 765, 2002, 3019
Eco57I	CTGAAG	3 cut(s)	92, 1204, 2898
Eco72I	CACGTG	1 cut(s)	1686
Eco81I	CCTNAGG	1 cut(s)	2495
Eco88I	CYCGRG	3 cut(s)	1227, 1492, 3023
Eco91I	GGTNACC	2 cut(s)	1511, 2153
EcoNI	CCTNNNNNAGG	1 cut(s)	3068
EcoO109I	RGGNCCY	2 cut(s)	1261, 3019
EcoO65I	GGTNACC	2 cut(s)	1511, 2153
EcoRII	CCWGG	5 cut(s)	454, 832, 2557, 2691, 2754
EcoRV	GATATC	2 cut(s)	538, 2137
EcoT14I	CCWWGG	1 cut(s)	2007
EcoT22I	ATGCAT	1 cut(s)	2905
EcoT38I	GRGCYC	1 cut(s)	1228
ErhI	CCWWGG	1 cut(s)	2007
Esp3I	CGTCTC	1 cut(s)	926
FalI	AAGNNNNNCTT	4 cut(s)	1250, 1282, 1853, 1885
FaqI	GGGAC	5 cut(s)	625, 1090, 2046, 2477, 3005
FauNDI	CATATG	1 cut(s)	2521
FbaI	TGATCA	2 cut(s)	1627, 2607
FblI	GTMKAC	4 cut(s)	1442, 1866, 1972, 2206
Fnu4HI	GCNGC	7 cut(s)	344, 393, 608, 1366, 2346, 2838, 3003
FokI	GGATG	7 cut(s)	674, 951, 999, 1222, 2090, 2228, 2493
FriOI	GRGCYC	1 cut(s)	1228
Fsp4HI	GCNGC	7 cut(s)	344, 393, 608, 1366, 2346, 2838, 3003
FspBI	CTAG	5 cut(s)	1311, 1596, 1964, 2795, 2847
GlaI	GCGC	2 cut(s)	1136, 2750
GluI	GCNGC	7 cut(s)	344, 393, 608, 1366, 2346, 2838, 3003
GsuI	CTGGAG	1 cut(s)	1442
HaeII	RGCGCY	1 cut(s)	1138
HaeIII	GGCC	6 cut(s)	378, 1103, 1263, 1729, 2024, 2493
HapII	CCGG	2 cut(s)	168, 1100
HgaI	GACGC	2 cut(s)	173, 314
HhaI	GCGC	2 cut(s)	1137, 2751
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	2 cut(s)	1135, 2749
HinP1I	GCGC	2 cut(s)	1135, 2749
HincII	GTYRAC	1 cut(s)	1942
HindII	GTYRAC	1 cut(s)	1942
HindIII	AAGCTT	5 cut(s)	96, 104, 690, 2876, 2894
HinfI	GANTC	8 cut(s)	717, 1033, 1667, 2275, 2324, 3059, 3092, 3097
HpaII	CCGG	2 cut(s)	168, 1100
HphI	GGTGA	5 cut(s)	956, 1505, 1559, 1831, 1951
Hpy166II	GTNNAC	7 cut(s)	745, 1443, 1867, 1942, 1973, 2207, 2869
Hpy188I	TCNGA	8 cut(s)	189, 778, 1223, 1672, 2119, 2341, 2681, 2917
Hpy8I	GTNNAC	7 cut(s)	745, 1443, 1867, 1942, 1973, 2207, 2869
Hpy99I	CGWCG	2 cut(s)	618, 2557
HpyAV	CCTTC	6 cut(s)	377, 1023, 1199, 1252, 3022, 3064
HpyCH4III	ACNGT	8 cut(s)	13, 137, 242, 1440, 1517, 2159, 2311, 2538
HpyCH4IV	ACGT	4 cut(s)	613, 1685, 1969, 2545
HpyF3I	CTNAG	7 cut(s)	1298, 1669, 2064, 2112, 2281, 2338, 2495
HpySE526I	ACGT	4 cut(s)	613, 1685, 1969, 2545
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	2 cut(s)	1135, 2749
KpnI	GGTACC	1 cut(s)	271
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	2 cut(s)	1627, 2607
LmnI	GCTCC	3 cut(s)	1330, 2638, 2845
Lsp1109I	GCAGC	6 cut(s)	379, 619, 1377, 2357, 2824, 2989
MaeI	CTAG	5 cut(s)	1311, 1596, 1964, 2795, 2847
MaeII	ACGT	4 cut(s)	613, 1685, 1969, 2545
MaeIII	GTNAC	9 cut(s)	314, 355, 1237, 1511, 2153, 2168, 2499, 2524, 3031
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	3 cut(s)	790, 2923, 2934
MhlI	GDGCHC	4 cut(s)	367, 596, 1228, 1788
MlsI	TGGCCA	1 cut(s)	1729
MluNI	TGGCCA	1 cut(s)	1729
MlyI	GAGTC	3 cut(s)	711, 1661, 3101
MmeI	TCCRAC	2 cut(s)	212, 2867
Mox20I	TGGCCA	1 cut(s)	1729
Mph1103I	ATGCAT	1 cut(s)	2905
MreI	CGCCGGCG	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	1729
MseI	TTAA	6 cut(s)	506, 1020, 1359, 2039, 2787, 3130
MslI	CAYNNNNRTG	3 cut(s)	14, 969, 993
Msp20I	TGGCCA	1 cut(s)	1729
MspA1I	CMGCKG	1 cut(s)	2380
MspI	CCGG	2 cut(s)	168, 1100
MspR9I	CCNGG	6 cut(s)	456, 834, 1100, 2559, 2693, 2756
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	2188
MvaI	CCWGG	5 cut(s)	456, 834, 2559, 2693, 2756
MvnI	CGCG	2 cut(s)	546, 2751
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	1100
NdeI	CATATG	1 cut(s)	2521
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	2794
NlaIV	GGNNCC	8 cut(s)	269, 364, 595, 641, 792, 1332, 2004, 3021
NmuCI	GTSAC	5 cut(s)	314, 355, 1237, 1511, 2524
NruI	TCGCGA	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	2905
NspI	RCATGY	1 cut(s)	1007
PaeR7I	CTCGAG	1 cut(s)	1492
PasI	CCCWGGG	1 cut(s)	2692
PcsI	WCGNNNNNNNCGW	1 cut(s)	1691
PctI	GAATGC	1 cut(s)	2188
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	5 cut(s)	1033, 2275, 2324, 3059, 3097
PflMI	CCANNNNNTGG	2 cut(s)	1022, 1073
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	7 cut(s)	345, 394, 609, 1367, 2347, 2839, 3004
PleI	GAGTC	3 cut(s)	711, 1661, 3100
PmaCI	CACGTG	1 cut(s)	1686
PmlI	CACGTG	1 cut(s)	1686
PpsI	GAGTC	3 cut(s)	711, 1661, 3100
Ppu21I	YACGTR	1 cut(s)	1686
PpuMI	RGGWCCY	1 cut(s)	3019
PshAI	GACNNNNGTC	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	3019
Psp6I	CCWGG	5 cut(s)	454, 832, 2557, 2691, 2754
PspCI	CACGTG	1 cut(s)	1686
PspEI	GGTNACC	2 cut(s)	1511, 2153
PspGI	CCWGG	5 cut(s)	454, 832, 2557, 2691, 2754
PspN4I	GGNNCC	8 cut(s)	269, 364, 595, 641, 792, 1332, 2004, 3021
PspPI	GGNCC	6 cut(s)	639, 765, 1102, 1261, 2002, 3019
PspPPI	RGGWCCY	1 cut(s)	3019
PstNI	CAGNNNCTG	1 cut(s)	2351
PsuI	RGATCY	3 cut(s)	790, 2923, 2934
PvuII	CAGCTG	1 cut(s)	2380
RruI	TCGCGA	1 cut(s)	546
RsaI	GTAC	4 cut(s)	269, 1355, 2375, 2600
RsaNI	GTAC	4 cut(s)	268, 1354, 2374, 2599
RseI	CAYNNNNRTG	3 cut(s)	14, 969, 993
Rsr2I	CGGWCCG	1 cut(s)	765
RsrII	CGGWCCG	1 cut(s)	765
SaqAI	TTAA	6 cut(s)	506, 1020, 1359, 2039, 2787, 3130
SatI	GCNGC	7 cut(s)	344, 393, 608, 1366, 2346, 2838, 3003
Sau96I	GGNCC	6 cut(s)	639, 765, 1102, 1261, 2002, 3019
SchI	GAGTC	3 cut(s)	711, 1661, 3101
ScrFI	CCNGG	6 cut(s)	456, 834, 1100, 2559, 2693, 2756
SduI	GDGCHC	4 cut(s)	367, 596, 1228, 1788
SfcI	CTRYAG	2 cut(s)	238, 724
Sfr274I	CTCGAG	1 cut(s)	1492
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	4 cut(s)	639, 765, 2002, 3019
SlaI	CTCGAG	1 cut(s)	1492
SmiMI	CAYNNNNRTG	3 cut(s)	14, 969, 993
SmlI	CTYRAG	5 cut(s)	1145, 1492, 1614, 2891, 3065
SmoI	CTYRAG	5 cut(s)	1145, 1492, 1614, 2891, 3065
SspI	AATATT	1 cut(s)	2995
SspMI	CTAG	5 cut(s)	1311, 1596, 1964, 2795, 2847
StyD4I	CCNGG	6 cut(s)	454, 832, 1098, 2557, 2691, 2754
StyI	CCWWGG	1 cut(s)	2007
TaaI	ACNGT	8 cut(s)	13, 137, 242, 1440, 1517, 2159, 2311, 2538
TaiI	ACGT	4 cut(s)	616, 1688, 1972, 2548
TaqI	TCGA	7 cut(s)	32, 1493, 1654, 1885, 2823, 2981, 3095
TaqII	GACCGA	1 cut(s)	530
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	5 cut(s)	1033, 2275, 2324, 3059, 3097
Tru1I	TTAA	6 cut(s)	506, 1020, 1359, 2039, 2787, 3130
Tru9I	TTAA	6 cut(s)	506, 1020, 1359, 2039, 2787, 3130
TscAI	CASTG	7 cut(s)	142, 966, 1355, 2113, 2168, 2193, 2289
TseFI	GTSAC	5 cut(s)	314, 355, 1237, 1511, 2524
TseI	GCWGC	6 cut(s)	392, 607, 1365, 2345, 2837, 3002
Tsp45I	GTSAC	5 cut(s)	314, 355, 1237, 1511, 2524
TspRI	CASTG	7 cut(s)	142, 966, 1355, 2113, 2168, 2193, 2289
Van91I	CCANNNNNTGG	2 cut(s)	1022, 1073
VpaK11BI	GGWCC	4 cut(s)	639, 765, 2002, 3019
XagI	CCTNNNNNAGG	1 cut(s)	3068
XapI	RAATTY	8 cut(s)	551, 854, 1053, 1302, 1562, 1572, 1765, 3125
XbaI	TCTAGA	1 cut(s)	1310
XceI	RCATGY	1 cut(s)	1007
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1019
XhoI	CTCGAG	1 cut(s)	1492
XmiI	GTMKAC	4 cut(s)	1442, 1866, 1972, 2206
XspI	CTAG	5 cut(s)	1311, 1596, 1964, 2795, 2847
Zsp2I	ATGCAT	1 cut(s)	2905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.