Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

57795919 .. 57797705

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGCTGAGGACGAAGGAGATGATGAGGAGCGTGATGAAGAAAGTCGGAGACAAAAACCTAAACCCCCGATTGAAACAGGAGCTCAAGAAGAATCGCTTGCCCGACCCCAAAATCGTCATGGGCCGAGCCCAACGTGGCATCTTCGCCGGCCGCCACATCCAGTTCGGCAATAACGTCAGCGAAGACGGCGGCAACAAGACAAGGAGGAATTGGAAGCCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATCCTAGACCGCCAGATTCGAGTCAAAGTCACCACCCACGCTTTGCGTTGCATAGACAAGGCAGGTGGGATTGATGAGTACTTTCTCAAAACTCCTTACCACAAGATGGACACCGAAATGGGCCTTGTCTGGAAAGCCAAAATTGAAAAGCTGTATGAAGAGGTTGGGCAGACAGGGGGATATGCTTTCCTACAACCTAAAGATGAACCCAAGGTTGAACAGGAATTTAAAGAACTAAAACTAGATGAGAGGGAAGTCAAGAGACAGATGTATGGTTGGTCGAAGAAACTAAAACAGATTGAGGAACGAAAAGACAACCAAATCAGTGATAAAGAAGCTCATGAGGAAGGTGCAGGAATAGGGGAAGCAAGCTCTCATGTAGAGGATCATGAGCAGTTGGTTGCAAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

221

Amino Acids

25.71

Weight (kDa)

9.43

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28	PF00830	47 - 105	9.3e-23	Ribosomal L28 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	4 cut(s)	154, 192, 238, 262
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	76, 398, 470
AluBI	AGCT	4 cut(s)	85, 403, 590, 624
AluI	AGCT	4 cut(s)	85, 403, 590, 624
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	45, 508
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	3 cut(s)	124, 151, 373
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	124, 373
AsuHPI	GGTGA	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	87, 133
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	8
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	45, 508
BfaI	CTAG	2 cut(s)	257, 494
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	154, 193, 239
BlsI	GCNGC	3 cut(s)	155, 194, 240
BmcAI	AGTACT	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	124, 373
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	159, 252
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	43
BseX3I	CGGCCG	1 cut(s)	151
BsgI	GTGCAG	2 cut(s)	248, 624
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	126, 153, 375
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	45, 508
BsnI	GGCC	3 cut(s)	126, 153, 375
Bsp1286I	GDGCHC	2 cut(s)	87, 133
Bsp143I	GATC	1 cut(s)	637
BspACI	CCGC	4 cut(s)	154, 192, 238, 262
BspANI	GGCC	3 cut(s)	126, 153, 375
BspHI	TCATGA	2 cut(s)	592, 640
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	462
Bst6I	CTCTTC	2 cut(s)	248, 405
BstC8I	GCNNGC	3 cut(s)	101, 151, 622
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	159, 252
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	2 cut(s)	45, 508
BstMBI	GATC	1 cut(s)	637
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 226, 235
BstV2I	GAAGAC	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	126, 153, 375
BtsCI	GGATG	2 cut(s)	159, 252
BtsIMutI	CAGTG	1 cut(s)	583
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	101, 151, 622
CciI	TCATGA	2 cut(s)	592, 640
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	124, 373
Csp6I	GTAC	1 cut(s)	331
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	4 cut(s)	121, 593, 629, 641
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
DraI	TTTAAA	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	248, 405
EarI	CTCTTC	2 cut(s)	248, 405
Ecl136II	GAGCTC	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	2 cut(s)	87, 133
Eco52I	CGGCCG	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	87, 133
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	124, 596, 632, 644
FaiI	YATR	8 cut(s)	122, 305, 408, 435, 525, 594, 630, 642
FalI	AAGNNNNNCTT	4 cut(s)	83, 115, 227, 259
FatI	CATG	4 cut(s)	120, 592, 628, 640
Fnu4HI	GCNGC	3 cut(s)	154, 193, 239
FokI	GGATG	2 cut(s)	146, 239
FriOI	GRGCYC	2 cut(s)	87, 133
Fsp4HI	GCNGC	3 cut(s)	154, 193, 239
FspBI	CTAG	2 cut(s)	257, 494
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	154, 193, 239
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	126, 153, 375
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	124, 596, 632, 644
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	94, 268, 273
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	6 cut(s)	88, 382, 511, 593, 641, 663
HpyAV	CCTTC	2 cut(s)	10, 593
HpyCH4IV	ACGT	2 cut(s)	136, 177
HpyCH4V	TGCA	4 cut(s)	229, 303, 605, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 226, 235
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	136, 177
Hsp92II	CATG	4 cut(s)	124, 596, 632, 644
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	637
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	30, 82
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	257, 494
MaeII	ACGT	2 cut(s)	136, 177
MaeIII	GTNAC	2 cut(s)	248, 280
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	7 cut(s)	52, 103, 136, 197, 235, 422, 547
MhlI	GDGCHC	2 cut(s)	87, 133
MluCI	AATT	3 cut(s)	211, 393, 476
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	8 cut(s)	3, 21, 201, 406, 495, 547, 589, 628
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	189, 226, 235
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	1 cut(s)	637
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	124, 596, 632, 644
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	280
PagI	TCATGA	2 cut(s)	592, 640
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	94, 268
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	155, 194, 240
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	124, 373
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	154, 193, 239
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	2 cut(s)	124, 373
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	87, 133
SfaNI	GCATC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	211, 393, 476
SsiI	CCGC	4 cut(s)	154, 192, 238, 262
SspMI	CTAG	2 cut(s)	257, 494
SstI	GAGCTC	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	462
TaiI	ACGT	2 cut(s)	139, 180
TaqI	TCGA	2 cut(s)	271, 533
TasI	AATT	3 cut(s)	211, 393, 476
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	3 cut(s)	156, 195, 241
TfiI	GAWTC	2 cut(s)	94, 268
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	53, 423, 471
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	257, 494
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.