Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

56228237 .. 56230960

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTAAACACTACAGTCCAAGTGATGTAGAGAAGGCGTGGTACGCGTGGTGGGAGATACAAGGCTACTTTGTCGCAGACGCTAAAAGTCACAAACCTCCATTTGAAATGCCCCTGCCGCCTCCCAATGTGACTGGTGCCCTTCATTTAGGCCATGTTCTTACTGCTGCTATTCAGGACACTATGATTCGTCATCGGAGAATGTCAGGTTTTAATACCTTGTGGCCTCCTGGACTTGACCATGCTGGTATAGCAACACAGGTTGTTGTGGAAAAGAAGCTAATGCGTGAAAGCGGTAAAACCAGACATGATATCGGTCGCGAGGAATTTATCTCTAAAGTTTGGGATTGGAAAATTAAGTATGGGGGCACCATTTTACAGCAGCTACGTCGTTTGAGTGCTTCTTTAGATTGGTCCCATGAGTGCTTTACAATGGATGAGAAAAGTTCAAAGGCTGTTGCAGAAGCTTTTGTTAGGCTACATAATCAAGGACTCATCTACAGGGATAATCGCATAGTGAACTGGGATTGTGTGTTGCGGACTGCAATATCTGATATTGAGGTGGATCCTCCAATTGAAATAAAAGAAAGGACACTATTAGAAGTTCCTGGATATGAGAACCCTGTTGAATTTGGTGTTTTGACTTTATTTGCATATCCTGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCCACTACCCGAATAGAGACGATGCTTGGTGATACTGCTATTGCAGTGCATCCTAATGACGAAAGATATAAGCATCTTCATGGAAAACATGCAATCCATCCATTTAATGGAAGAAGGGATTCCTATAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

274

Amino Acids

31.39

Weight (kDa)

6.39

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	14 - 189	1.1e-63	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	43 - 94	8.5e-06	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	137, 368
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	2 cut(s)	47, 321
AciI	CCGC	3 cut(s)	119, 294, 538
AclWI	GGATC	2 cut(s)	560, 573
AcsI	RAATTY	2 cut(s)	326, 629
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	107, 450, 578, 629
AjnI	CCWGG	2 cut(s)	229, 607
AluBI	AGCT	3 cut(s)	280, 385, 467
AluI	AGCT	3 cut(s)	280, 385, 467
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	560, 573
AoxI	GGCC	2 cut(s)	151, 224
ApeKI	GCWGC	2 cut(s)	167, 382
ApoI	RAATTY	2 cut(s)	326, 629
Asp700I	GAANNNNTTC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	689, 731
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	2 cut(s)	142, 371
BamHI	GGATCC	1 cut(s)	565
BanI	GGYRCC	2 cut(s)	137, 368
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbvI	GCAGC	2 cut(s)	154, 394
BccI	CCATC	1 cut(s)	795
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	231, 609
BcoDI	GTCTC	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	13, 499
BisI	GCNGC	3 cut(s)	119, 168, 383
BlsI	GCNGC	3 cut(s)	120, 169, 384
Bme1390I	CCNGG	2 cut(s)	231, 609
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	4 cut(s)	139, 370, 416, 567
BmrFI	CCNGG	2 cut(s)	231, 609
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	3 cut(s)	702, 748, 772
BmuI	ACTGGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	2 cut(s)	139, 527
BseBI	CCWGG	2 cut(s)	231, 609
BseGI	GGATG	3 cut(s)	442, 739, 787
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseNI	ACTGG	2 cut(s)	139, 527
BseSI	GKGCMC	2 cut(s)	142, 371
BseXI	GCAGC	2 cut(s)	154, 394
Bsh1236I	CGCG	2 cut(s)	47, 321
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	153, 226
BshNI	GGYRCC	2 cut(s)	137, 368
BsiEI	CGRYCG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	1 cut(s)	701
BsmBI	CGTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	153, 226
Bsp1286I	GDGCHC	2 cut(s)	142, 371
Bsp143I	GATC	1 cut(s)	565
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	3 cut(s)	119, 294, 538
BspANI	GGCC	2 cut(s)	153, 226
BspFNI	CGCG	2 cut(s)	47, 321
BspLI	GGNNCC	4 cut(s)	139, 370, 416, 567
BspPI	GGATC	2 cut(s)	560, 573
BspT107I	GGYRCC	2 cut(s)	137, 368
BsrI	ACTGG	2 cut(s)	139, 527
BssMI	GATC	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	231, 609
Bst4CI	ACNGT	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	442, 739, 787
BstFNI	CGCG	2 cut(s)	47, 321
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	1 cut(s)	565
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 118, 251
BstNI	CCWGG	2 cut(s)	231, 609
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	229, 607
BstSFI	CTRYAG	2 cut(s)	13, 499
BstSLI	GKGCMC	2 cut(s)	142, 371
BstUI	CGCG	2 cut(s)	47, 321
BstV1I	GCAGC	2 cut(s)	154, 394
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	153, 226
BtsCI	GGATG	3 cut(s)	442, 739, 787
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
BtuMI	TCGCGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	414
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	6 cut(s)	155, 242, 308, 419, 770, 779
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	229, 607
EcoRV	GATATC	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	6 cut(s)	158, 245, 311, 422, 773, 782
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	6 cut(s)	154, 241, 307, 418, 769, 778
Fnu4HI	GCNGC	3 cut(s)	119, 168, 383
FokI	GGATG	3 cut(s)	449, 726, 774
Fsp4HI	GCNGC	3 cut(s)	119, 168, 383
GluI	GCNGC	3 cut(s)	119, 168, 383
HaeIII	GGCC	2 cut(s)	153, 226
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	158, 245, 311, 422, 773, 782
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	3 cut(s)	187, 492, 809
HphI	GGTGA	2 cut(s)	689, 731
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	198, 553
Hpy188III	TCNNGA	2 cut(s)	176, 320
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	3 cut(s)	28, 152, 798
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	6 cut(s)	461, 545, 653, 734, 739, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 118, 251
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	6 cut(s)	158, 245, 311, 422, 773, 782
Kzo9I	GATC	1 cut(s)	565
Lsp1109I	GCAGC	2 cut(s)	154, 394
LweI	GCATC	3 cut(s)	702, 748, 772
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	89, 130
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	4 cut(s)	677, 680, 758, 813
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	142, 371
MluCI	AATT	4 cut(s)	326, 354, 573, 629
MluI	ACGCGT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	486
MnlI	CCTC	6 cut(s)	108, 132, 237, 316, 553, 579
MroXI	GAANNNNTTC	1 cut(s)	808
MseI	TTAA	3 cut(s)	213, 357, 795
MslI	CAYNNNNRTG	2 cut(s)	744, 768
MspR9I	CCNGG	2 cut(s)	231, 609
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	2 cut(s)	231, 609
MvnI	CGCG	2 cut(s)	47, 321
MwoI	GCNNNNNNNGC	3 cut(s)	44, 118, 251
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	6 cut(s)	158, 245, 311, 422, 773, 782
NlaIV	GGNNCC	4 cut(s)	139, 370, 416, 567
NmuCI	GTSAC	2 cut(s)	89, 130
NruI	TCGCGA	1 cut(s)	321
NspI	RCATGY	1 cut(s)	782
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	187, 809
PflMI	CCANNNNNTGG	1 cut(s)	797
PfoI	TCCNGGA	2 cut(s)	229, 607
PkrI	GCNGC	3 cut(s)	120, 169, 384
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	229, 607
PspGI	CCWGG	2 cut(s)	229, 607
PspN4I	GGNNCC	4 cut(s)	139, 370, 416, 567
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	565
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	744, 768
SaqAI	TTAA	3 cut(s)	213, 357, 795
SatI	GCNGC	3 cut(s)	119, 168, 383
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	486
ScrFI	CCNGG	2 cut(s)	231, 609
SduI	GDGCHC	2 cut(s)	142, 371
SfaNI	GCATC	3 cut(s)	702, 748, 772
SfcI	CTRYAG	2 cut(s)	13, 499
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	744, 768
Sse9I	AATT	4 cut(s)	326, 354, 573, 629
SsiI	CCGC	3 cut(s)	119, 294, 538
StyD4I	CCNGG	2 cut(s)	229, 607
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	391
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	4 cut(s)	326, 354, 573, 629
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	187, 809
Tru1I	TTAA	3 cut(s)	213, 357, 795
Tru9I	TTAA	3 cut(s)	213, 357, 795
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	2 cut(s)	89, 130
TseI	GCWGC	2 cut(s)	167, 382
Tsp45I	GTSAC	2 cut(s)	89, 130
TspDTI	ATGAA	2 cut(s)	134, 758
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	2 cut(s)	326, 629
XceI	RCATGY	1 cut(s)	782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.