Belongs to the class-I aminoacyl-tRNA synthetase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA-synt_1 | PF00133 | 171 - 791 | 3.3e-143 | tRNA synthetases class I (I, L, M and V) |
| tRNA-synt_1g | PF09334 | 197 - 261 | 7.4e-07 | tRNA synthetases class I (M) |
| tRNA-synt_1_2 | PF13603 | 413 - 472 | 1.8e-06 | Leucyl-tRNA synthetase, editing domain |
| Anticodon_1 | PF08264 | 837 - 979 | 5.8e-33 | Anticodon-binding domain of tRNA ligase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1869 |
| Acc65I | GGTACC | 1 cut(s) | 1224 |
| AccB1I | GGYRCC | 6 cut(s) | 44, 151, 608, 697, 839, 1224 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1316, 2712, 3010, 3334 |
| AccI | GTMKAC | 1 cut(s) | 1685 |
| AccII | CGCG | 2 cut(s) | 759, 2127 |
| AccIII | TCCGGA | 1 cut(s) | 412 |
| AclWI | GGATC | 9 cut(s) | 1301, 1346, 1901, 1914, 2168, 2237, 2250, 2663, 2811 |
| AcoI | YGGCCR | 3 cut(s) | 207, 622, 1158 |
| AcsI | RAATTY | 9 cut(s) | 137, 797, 1097, 1313, 1442, 1545, 1877, 1889, 2236 |
| AcuI | CTGAAG | 5 cut(s) | 176, 317, 828, 1992, 2009 |
| AcyI | GRCGYC | 1 cut(s) | 152 |
| AfaI | GTAC | 8 cut(s) | 108, 1206, 1226, 2074, 2091, 2430, 2526, 2615 |
| AfeI | AGCGCT | 1 cut(s) | 2858 |
| AgeI | ACCGGT | 1 cut(s) | 2021 |
| AjnI | CCWGG | 3 cut(s) | 700, 773, 1075 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1167, 1199 |
| AleI | CACNNNNGTG | 1 cut(s) | 2594 |
| Alw21I | GWGCWC | 1 cut(s) | 563 |
| Alw26I | GTCTC | 4 cut(s) | 428, 1946, 2344, 3315 |
| AlwI | GGATC | 9 cut(s) | 1301, 1346, 1901, 1914, 2168, 2237, 2250, 2663, 2811 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2591, 2960 |
| Ama87I | CYCGRG | 2 cut(s) | 1470, 3293 |
| Aor13HI | TCCGGA | 1 cut(s) | 412 |
| Aor51HI | AGCGCT | 1 cut(s) | 2858 |
| ApaI | GGGCCC | 1 cut(s) | 75 |
| ApoI | RAATTY | 9 cut(s) | 137, 797, 1097, 1313, 1442, 1545, 1877, 1889, 2236 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2666, 2698, 3231, 3263 |
| AsiGI | ACCGGT | 1 cut(s) | 2021 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1629, 3139 |
| Asp718I | GGTACC | 1 cut(s) | 1224 |
| AspLEI | GCGC | 6 cut(s) | 154, 759, 1380, 1539, 2787, 2859 |
| AspS9I | GGNCC | 8 cut(s) | 71, 72, 709, 885, 924, 1345, 1504, 3247 |
| AsuC2I | CCSGG | 1 cut(s) | 3251 |
| AsuHPI | GGTGA | 5 cut(s) | 1157, 1199, 1748, 1802, 2787 |
| AvaI | CYCGRG | 2 cut(s) | 1470, 3293 |
| AvaII | GGWCC | 3 cut(s) | 709, 885, 3247 |
| AxyI | CCTNAGG | 1 cut(s) | 2292 |
| BaeGI | GKGCMC | 3 cut(s) | 75, 613, 842 |
| BalI | TGGCCA | 2 cut(s) | 624, 1160 |
| BamHI | GGATCC | 2 cut(s) | 1906, 2242 |
| BanI | GGYRCC | 6 cut(s) | 44, 151, 608, 697, 839, 1224 |
| BanII | GRGCYC | 3 cut(s) | 75, 563, 1578 |
| BbsI | GAAGAC | 4 cut(s) | 189, 252, 536, 3189 |
| Bbv12I | GWGCWC | 1 cut(s) | 563 |
| BccI | CCATC | 8 cut(s) | 217, 513, 1409, 1427, 1698, 1821, 3012, 3172 |
| BceAI | ACGGC | 2 cut(s) | 911, 3123 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 842, 876, 3047, 3081, 3330, 3364 |
| BciT130I | CCWGG | 3 cut(s) | 702, 775, 1077 |
| BciVI | GTATCC | 1 cut(s) | 2508 |
| BcnI | CCSGG | 1 cut(s) | 3251 |
| BcoDI | GTCTC | 4 cut(s) | 428, 1946, 2344, 3315 |
| BfaI | CTAG | 5 cut(s) | 351, 986, 1167, 1554, 2852 |
| BfmI | CTRYAG | 4 cut(s) | 970, 1689, 2259, 2592 |
| BfoI | RGCGCY | 4 cut(s) | 155, 1381, 2788, 2860 |
| BfuI | GTATCC | 1 cut(s) | 2508 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 215, 1475 |
| BglII | AGATCT | 1 cut(s) | 1984 |
| BmcAI | AGTACT | 1 cut(s) | 108 |
| Bme1390I | CCNGG | 4 cut(s) | 702, 775, 1077, 3251 |
| Bme18I | GGWCC | 3 cut(s) | 709, 885, 3247 |
| BmeT110I | CYCGRG | 2 cut(s) | 1470, 3293 |
| BmgT120I | GGNCC | 8 cut(s) | 71, 72, 709, 885, 924, 1345, 1504, 3247 |
| BmrFI | CCNGG | 4 cut(s) | 702, 775, 1077, 3251 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2730 |
| BpiI | GAAGAC | 4 cut(s) | 189, 252, 536, 3189 |
| BpmI | CTGGAG | 1 cut(s) | 3032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1521 |
| BpuEI | CTTGAG | 5 cut(s) | 31, 1470, 1685, 1730, 3107 |
| BpuMI | CCSGG | 1 cut(s) | 3251 |
| BsaHI | GRCGYC | 1 cut(s) | 152 |
| BsaI | GGTCTC | 1 cut(s) | 1946 |
| BsaJI | CCNNGG | 3 cut(s) | 1540, 2157, 2247 |
| BsaWI | WCCGGW | 2 cut(s) | 412, 2021 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1431, 1461 |
| Bse118I | RCCGGY | 5 cut(s) | 209, 1227, 1342, 2021, 3230 |
| Bse1I | ACTGG | 7 cut(s) | 610, 887, 1327, 1869, 2509, 3015, 3082 |
| Bse21I | CCTNAGG | 1 cut(s) | 2292 |
| Bse3DI | GCAATG | 1 cut(s) | 3191 |
| BseAI | TCCGGA | 1 cut(s) | 412 |
| BseBI | CCWGG | 3 cut(s) | 702, 775, 1077 |
| BseDI | CCNNGG | 3 cut(s) | 1540, 2157, 2247 |
| BseMI | GCAATG | 1 cut(s) | 3191 |
| BseMII | CTCAG | 2 cut(s) | 2366, 2592 |
| BseNI | ACTGG | 7 cut(s) | 610, 887, 1327, 1869, 2509, 3015, 3082 |
| BseRI | GAGGAG | 2 cut(s) | 152, 419 |
| BseSI | GKGCMC | 3 cut(s) | 75, 613, 842 |
| BseX3I | CGGCCG | 1 cut(s) | 207 |
| BseYI | CCCAGC | 1 cut(s) | 716 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| Bsh1236I | CGCG | 2 cut(s) | 759, 2127 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshNI | GGYRCC | 6 cut(s) | 44, 151, 608, 697, 839, 1224 |
| BshTI | ACCGGT | 1 cut(s) | 2021 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 563 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1470, 3293 |
| BsiSI | CCGG | 8 cut(s) | 206, 210, 413, 1228, 1343, 2022, 3231, 3251 |
| BslFI | GGGAC | 3 cut(s) | 871, 1333, 3233 |
| BsmAI | GTCTC | 4 cut(s) | 428, 1946, 2344, 3315 |
| BsmFI | GGGAC | 3 cut(s) | 871, 1333, 3233 |
| BsmI | GAATGC | 2 cut(s) | 2312, 2428 |
| Bso31I | GGTCTC | 1 cut(s) | 1946 |
| BsoBI | CYCGRG | 2 cut(s) | 1470, 3293 |
| Bsp120I | GGGCCC | 1 cut(s) | 71 |
| Bsp1286I | GDGCHC | 5 cut(s) | 75, 563, 613, 842, 1578 |
| Bsp13I | TCCGGA | 1 cut(s) | 412 |
| Bsp1407I | TGTACA | 1 cut(s) | 1204 |
| Bsp68I | TCGCGA | 1 cut(s) | 2127 |
| BspCNI | CTCAG | 2 cut(s) | 2365, 2591 |
| BspEI | TCCGGA | 1 cut(s) | 412 |
| BspFNI | CGCG | 2 cut(s) | 759, 2127 |
| BspHI | TCATGA | 1 cut(s) | 2026 |
| BspMAI | CTGCAG | 2 cut(s) | 1693, 2596 |
| BspPI | GGATC | 9 cut(s) | 1301, 1346, 1901, 1914, 2168, 2237, 2250, 2663, 2811 |
| BspQI | GCTCTTC | 1 cut(s) | 2328 |
| BspT107I | GGYRCC | 6 cut(s) | 44, 151, 608, 697, 839, 1224 |
| BspTNI | GGTCTC | 1 cut(s) | 1946 |
| BsrDI | GCAATG | 1 cut(s) | 3191 |
| BsrFI | RCCGGY | 5 cut(s) | 209, 1227, 1342, 2021, 3230 |
| BsrGI | TGTACA | 1 cut(s) | 1204 |
| BsrI | ACTGG | 7 cut(s) | 610, 887, 1327, 1869, 2509, 3015, 3082 |
| BssAI | RCCGGY | 5 cut(s) | 209, 1227, 1342, 2021, 3230 |
| BssECI | CCNNGG | 3 cut(s) | 1540, 2157, 2247 |
| BssNAI | GTATAC | 1 cut(s) | 1686 |
| BssNI | GRCGYC | 1 cut(s) | 152 |
| BssT1I | CCWWGG | 3 cut(s) | 1540, 2157, 2247 |
| Bst1107I | GTATAC | 1 cut(s) | 1686 |
| Bst2UI | CCWGG | 3 cut(s) | 702, 775, 1077 |
| Bst4CI | ACNGT | 9 cut(s) | 31, 483, 768, 1683, 1760, 2260, 2418, 2778, 3049 |
| Bst6I | CTCTTC | 6 cut(s) | 195, 359, 1694, 1845, 1949, 2328 |
| BstACI | GRCGYC | 1 cut(s) | 152 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2591, 2600 |
| BstAUI | TGTACA | 1 cut(s) | 1204 |
| BstC8I | GCNNGC | 7 cut(s) | 1248, 1967, 2447, 2817, 3232, 3325, 3329 |
| BstDEI | CTNAG | 7 cut(s) | 360, 555, 1521, 2151, 2292, 2352, 2578 |
| BstEII | GGTNACC | 1 cut(s) | 1754 |
| BstFNI | CGCG | 2 cut(s) | 759, 2127 |
| BstH2I | RGCGCY | 4 cut(s) | 155, 1381, 2788, 2860 |
| BstHHI | GCGC | 6 cut(s) | 154, 759, 1380, 1539, 2787, 2859 |
| BstMAI | GTCTC | 4 cut(s) | 428, 1946, 2344, 3315 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstNI | CCWGG | 3 cut(s) | 702, 775, 1077 |
| BstNSI | RCATGY | 3 cut(s) | 383, 1250, 1868 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2730 |
| BstPI | GGTNACC | 1 cut(s) | 1754 |
| BstSCI | CCNGG | 4 cut(s) | 700, 773, 1075, 3249 |
| BstSFI | CTRYAG | 4 cut(s) | 970, 1689, 2259, 2592 |
| BstSLI | GKGCMC | 3 cut(s) | 75, 613, 842 |
| BstUI | CGCG | 2 cut(s) | 759, 2127 |
| BstV2I | GAAGAC | 4 cut(s) | 189, 252, 536, 3189 |
| BstX2I | RGATCY | 3 cut(s) | 1906, 1984, 2242 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1388 |
| BstYI | RGATCY | 3 cut(s) | 1906, 1984, 2242 |
| BstZ17I | GTATAC | 1 cut(s) | 1686 |
| BstZI | CGGCCG | 1 cut(s) | 207 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2292 |
| BsuI | GTATCC | 1 cut(s) | 2508 |
| BtgZI | GCGATG | 4 cut(s) | 236, 1840, 2142, 3233 |
| BtsI | GCAGTG | 5 cut(s) | 1485, 1615, 2346, 2589, 2601 |
| BtsIMutI | CAGTG | 6 cut(s) | 1485, 1615, 2346, 2516, 2589, 2601 |
| BtuMI | TCGCGA | 1 cut(s) | 2127 |
| Cac8I | GCNNGC | 7 cut(s) | 1248, 1967, 2447, 2817, 3232, 3325, 3329 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2591, 2960 |
| CciI | TCATGA | 1 cut(s) | 2026 |
| CfoI | GCGC | 6 cut(s) | 154, 759, 1380, 1539, 2787, 2859 |
| Cfr10I | RCCGGY | 5 cut(s) | 209, 1227, 1342, 2021, 3230 |
| Cfr13I | GGNCC | 8 cut(s) | 71, 72, 709, 885, 924, 1345, 1504, 3247 |
| CseI | GACGC | 1 cut(s) | 109 |
| Csp6I | GTAC | 8 cut(s) | 107, 1205, 1225, 2073, 2090, 2429, 2525, 2614 |
| CspAI | ACCGGT | 1 cut(s) | 2021 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1730, 1765 |
| CviQI | GTAC | 8 cut(s) | 107, 1205, 1225, 2073, 2090, 2429, 2525, 2614 |
| DdeI | CTNAG | 7 cut(s) | 360, 555, 1521, 2151, 2292, 2352, 2578 |
| DinI | GGCGCC | 1 cut(s) | 153 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1869 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1869 |
| EaeI | YGGCCR | 3 cut(s) | 207, 622, 1158 |
| EagI | CGGCCG | 1 cut(s) | 207 |
| Eam1104I | CTCTTC | 6 cut(s) | 195, 359, 1694, 1845, 1949, 2328 |
| EarI | CTCTTC | 6 cut(s) | 195, 359, 1694, 1845, 1949, 2328 |
| EciI | GGCGGA | 1 cut(s) | 155 |
| Ecl136II | GAGCTC | 1 cut(s) | 561 |
| EclXI | CGGCCG | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 3 cut(s) | 1540, 2157, 2247 |
| Eco147I | AGGCCT | 1 cut(s) | 187 |
| Eco24I | GRGCYC | 3 cut(s) | 75, 563, 1578 |
| Eco31I | GGTCTC | 1 cut(s) | 1946 |
| Eco32I | GATATC | 1 cut(s) | 3348 |
| Eco47I | GGWCC | 3 cut(s) | 709, 885, 3247 |
| Eco47III | AGCGCT | 1 cut(s) | 2858 |
| Eco52I | CGGCCG | 1 cut(s) | 207 |
| Eco53kI | GAGCTC | 1 cut(s) | 561 |
| Eco57I | CTGAAG | 5 cut(s) | 176, 317, 828, 1992, 2009 |
| Eco81I | CCTNAGG | 1 cut(s) | 2292 |
| Eco88I | CYCGRG | 2 cut(s) | 1470, 3293 |
| Eco91I | GGTNACC | 1 cut(s) | 1754 |
| EcoICRI | GAGCTC | 1 cut(s) | 561 |
| EcoO109I | RGGNCCY | 3 cut(s) | 72, 1504, 3247 |
| EcoO65I | GGTNACC | 1 cut(s) | 1754 |
| EcoRII | CCWGG | 3 cut(s) | 700, 773, 1075 |
| EcoRV | GATATC | 1 cut(s) | 3348 |
| EcoT14I | CCWWGG | 3 cut(s) | 1540, 2157, 2247 |
| EcoT38I | GRGCYC | 3 cut(s) | 75, 563, 1578 |
| EgeI | GGCGCC | 1 cut(s) | 153 |
| EheI | GGCGCC | 1 cut(s) | 153 |
| ErhI | CCWWGG | 3 cut(s) | 1540, 2157, 2247 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1493, 1525, 1614, 1646, 2639, 2671, 3141, 3173 |
| FaqI | GGGAC | 3 cut(s) | 871, 1333, 3233 |
| FauNDI | CATATG | 2 cut(s) | 2476, 3333 |
| FblI | GTMKAC | 1 cut(s) | 1685 |
| FriOI | GRGCYC | 3 cut(s) | 75, 563, 1578 |
| FspBI | CTAG | 5 cut(s) | 351, 986, 1167, 1554, 2852 |
| GlaI | GCGC | 6 cut(s) | 153, 758, 1379, 1538, 2786, 2858 |
| GsaI | CCCAGC | 1 cut(s) | 720 |
| GsuI | CTGGAG | 1 cut(s) | 3032 |
| HaeII | RGCGCY | 4 cut(s) | 155, 1381, 2788, 2860 |
| HapII | CCGG | 8 cut(s) | 206, 210, 413, 1228, 1343, 2022, 3231, 3251 |
| HgaI | GACGC | 1 cut(s) | 109 |
| HhaI | GCGC | 6 cut(s) | 154, 759, 1380, 1539, 2787, 2859 |
| Hin1I | GRCGYC | 1 cut(s) | 152 |
| Hin6I | GCGC | 6 cut(s) | 152, 757, 1378, 1537, 2785, 2857 |
| HinP1I | GCGC | 6 cut(s) | 152, 757, 1378, 1537, 2785, 2857 |
| HincII | GTYRAC | 2 cut(s) | 771, 1110 |
| HindII | GTYRAC | 2 cut(s) | 771, 1110 |
| HindIII | AAGCTT | 4 cut(s) | 309, 329, 1661, 3125 |
| HpaI | GTTAAC | 1 cut(s) | 771 |
| HpaII | CCGG | 8 cut(s) | 206, 210, 413, 1228, 1343, 2022, 3231, 3251 |
| HphI | GGTGA | 5 cut(s) | 1157, 1199, 1748, 1802, 2787 |
| Hpy166II | GTNNAC | 6 cut(s) | 771, 1036, 1110, 1686, 2924, 3100 |
| Hpy8I | GTNNAC | 6 cut(s) | 771, 1036, 1110, 1686, 2924, 3100 |
| Hpy99I | CGWCG | 2 cut(s) | 31, 864 |
| HpyCH4III | ACNGT | 9 cut(s) | 31, 483, 768, 1683, 1760, 2260, 2418, 2778, 3049 |
| HpyCH4IV | ACGT | 6 cut(s) | 177, 859, 1061, 1401, 1459, 2088 |
| HpyF3I | CTNAG | 7 cut(s) | 360, 555, 1521, 2151, 2292, 2352, 2578 |
| HpySE526I | ACGT | 6 cut(s) | 177, 859, 1061, 1401, 1459, 2088 |
| Hsp92I | GRCGYC | 1 cut(s) | 152 |
| HspAI | GCGC | 6 cut(s) | 152, 757, 1378, 1537, 2785, 2857 |
| KasI | GGCGCC | 1 cut(s) | 151 |
| Kpn2I | TCCGGA | 1 cut(s) | 412 |
| KpnI | GGTACC | 1 cut(s) | 1228 |
| KroI | GCCGGC | 1 cut(s) | 3230 |
| KroNI | GCCGGC | 1 cut(s) | 3232 |
| KspAI | GTTAAC | 1 cut(s) | 771 |
| LguI | GCTCTTC | 1 cut(s) | 2328 |
| LmnI | GCTCC | 4 cut(s) | 6, 566, 1573, 3076 |
| MaeI | CTAG | 5 cut(s) | 351, 986, 1167, 1554, 2852 |
| MaeII | ACGT | 6 cut(s) | 177, 859, 1061, 1401, 1459, 2088 |
| MaeIII | GTNAC | 7 cut(s) | 601, 680, 928, 1480, 1754, 2764, 2793 |
| MfeI | CAATTG | 2 cut(s) | 1895, 2618 |
| MflI | RGATCY | 3 cut(s) | 1906, 1984, 2242 |
| MhlI | GDGCHC | 5 cut(s) | 75, 563, 613, 842, 1578 |
| MlsI | TGGCCA | 2 cut(s) | 624, 1160 |
| MluNI | TGGCCA | 2 cut(s) | 624, 1160 |
| Mly113I | GGCGCC | 1 cut(s) | 152 |
| MlyI | GAGTC | 4 cut(s) | 430, 475, 1477, 2690 |
| MmeI | TCCRAC | 5 cut(s) | 50, 79, 417, 1351, 3098 |
| Mox20I | TGGCCA | 2 cut(s) | 624, 1160 |
| MroI | TCCGGA | 1 cut(s) | 412 |
| MroNI | GCCGGC | 1 cut(s) | 3230 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1629, 3139 |
| MscI | TGGCCA | 2 cut(s) | 624, 1160 |
| MseI | TTAA | 5 cut(s) | 33, 770, 1263, 1493, 1602 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1031, 1212, 1236, 2594 |
| Msp20I | TGGCCA | 2 cut(s) | 624, 1160 |
| MspA1I | CMGCKG | 2 cut(s) | 149, 1937 |
| MspI | CCGG | 8 cut(s) | 206, 210, 413, 1228, 1343, 2022, 3231, 3251 |
| MspR9I | CCNGG | 4 cut(s) | 702, 775, 1077, 3251 |
| MunI | CAATTG | 2 cut(s) | 1895, 2618 |
| Mva1269I | GAATGC | 2 cut(s) | 2312, 2428 |
| MvaI | CCWGG | 3 cut(s) | 702, 775, 1077 |
| MvnI | CGCG | 2 cut(s) | 759, 2127 |
| NaeI | GCCGGC | 1 cut(s) | 3232 |
| NarI | GGCGCC | 1 cut(s) | 152 |
| NciI | CCSGG | 1 cut(s) | 3251 |
| NdeI | CATATG | 2 cut(s) | 2476, 3333 |
| NgoMIV | GCCGGC | 1 cut(s) | 3230 |
| NmuCI | GTSAC | 6 cut(s) | 601, 928, 1480, 1754, 2764, 2793 |
| NruI | TCGCGA | 1 cut(s) | 2127 |
| NspI | RCATGY | 3 cut(s) | 383, 1250, 1868 |
| OliI | CACNNNNGTG | 1 cut(s) | 2594 |
| PaeI | GCATGC | 1 cut(s) | 1250 |
| PaeR7I | CTCGAG | 1 cut(s) | 3293 |
| PagI | TCATGA | 1 cut(s) | 2026 |
| PceI | AGGCCT | 1 cut(s) | 187 |
| PciSI | GCTCTTC | 1 cut(s) | 2328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2947 |
| PctI | GAATGC | 2 cut(s) | 2312, 2428 |
| PdiI | GCCGGC | 1 cut(s) | 3232 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1629, 3139 |
| PfeI | GAWTC | 8 cut(s) | 409, 537, 1276, 2122, 2890, 2900, 3259, 3287 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1316, 2712, 3010, 3334 |
| PfoI | TCCNGGA | 2 cut(s) | 1075, 3249 |
| PinAI | ACCGGT | 1 cut(s) | 2021 |
| PleI | GAGTC | 4 cut(s) | 430, 474, 1477, 2689 |
| PluTI | GGCGCC | 1 cut(s) | 155 |
| PpsI | GAGTC | 4 cut(s) | 430, 474, 1477, 2689 |
| PpuMI | RGGWCCY | 1 cut(s) | 3247 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2730 |
| Psp124BI | GAGCTC | 1 cut(s) | 563 |
| Psp5II | RGGWCCY | 1 cut(s) | 3247 |
| Psp6I | CCWGG | 3 cut(s) | 700, 773, 1075 |
| PspEI | GGTNACC | 1 cut(s) | 1754 |
| PspFI | CCCAGC | 1 cut(s) | 716 |
| PspGI | CCWGG | 3 cut(s) | 700, 773, 1075 |
| PspOMI | GGGCCC | 1 cut(s) | 71 |
| PspPI | GGNCC | 8 cut(s) | 71, 72, 709, 885, 924, 1345, 1504, 3247 |
| PspPPI | RGGWCCY | 1 cut(s) | 3247 |
| PstI | CTGCAG | 2 cut(s) | 1693, 2596 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2591, 2960 |
| PsuI | RGATCY | 3 cut(s) | 1906, 1984, 2242 |
| RruI | TCGCGA | 1 cut(s) | 2127 |
| RsaI | GTAC | 8 cut(s) | 108, 1206, 1226, 2074, 2091, 2430, 2526, 2615 |
| RsaNI | GTAC | 8 cut(s) | 107, 1205, 1225, 2073, 2090, 2429, 2525, 2614 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1031, 1212, 1236, 2594 |
| SacI | GAGCTC | 1 cut(s) | 563 |
| SapI | GCTCTTC | 1 cut(s) | 2328 |
| SaqAI | TTAA | 5 cut(s) | 33, 770, 1263, 1493, 1602 |
| Sau96I | GGNCC | 8 cut(s) | 71, 72, 709, 885, 924, 1345, 1504, 3247 |
| ScaI | AGTACT | 1 cut(s) | 108 |
| SchI | GAGTC | 4 cut(s) | 430, 475, 1477, 2690 |
| ScrFI | CCNGG | 4 cut(s) | 702, 775, 1077, 3251 |
| SduI | GDGCHC | 5 cut(s) | 75, 563, 613, 842, 1578 |
| SfcI | CTRYAG | 4 cut(s) | 970, 1689, 2259, 2592 |
| SfoI | GGCGCC | 1 cut(s) | 153 |
| Sfr274I | CTCGAG | 1 cut(s) | 3293 |
| SinI | GGWCC | 3 cut(s) | 709, 885, 3247 |
| SlaI | CTCGAG | 1 cut(s) | 3293 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1031, 1212, 1236, 2594 |
| SmlI | CTYRAG | 6 cut(s) | 10, 1485, 1664, 1709, 3122, 3293 |
| SmoI | CTYRAG | 6 cut(s) | 10, 1485, 1664, 1709, 3122, 3293 |
| SphI | GCATGC | 1 cut(s) | 1250 |
| SseBI | AGGCCT | 1 cut(s) | 187 |
| SspDI | GGCGCC | 1 cut(s) | 151 |
| SspMI | CTAG | 5 cut(s) | 351, 986, 1167, 1554, 2852 |
| SstI | GAGCTC | 1 cut(s) | 563 |
| StuI | AGGCCT | 1 cut(s) | 187 |
| StyD4I | CCNGG | 4 cut(s) | 700, 773, 1075, 3249 |
| StyI | CCWWGG | 3 cut(s) | 1540, 2157, 2247 |
| TaaI | ACNGT | 9 cut(s) | 31, 483, 768, 1683, 1760, 2260, 2418, 2778, 3049 |
| TaiI | ACGT | 6 cut(s) | 180, 862, 1064, 1404, 1462, 2091 |
| TaqI | TCGA | 7 cut(s) | 464, 2883, 2971, 3212, 3294, 3315, 3350 |
| TatI | WGTACW | 3 cut(s) | 106, 1204, 2072 |
| TauI | GCSGC | 4 cut(s) | 152, 157, 171, 221 |
| TfiI | GAWTC | 8 cut(s) | 409, 537, 1276, 2122, 2890, 2900, 3259, 3287 |
| Tru1I | TTAA | 5 cut(s) | 33, 770, 1263, 1493, 1602 |
| Tru9I | TTAA | 5 cut(s) | 33, 770, 1263, 1493, 1602 |
| TscAI | CASTG | 6 cut(s) | 1485, 1615, 2353, 2516, 2596, 2601 |
| TseFI | GTSAC | 6 cut(s) | 601, 928, 1480, 1754, 2764, 2793 |
| Tsp45I | GTSAC | 6 cut(s) | 601, 928, 1480, 1754, 2764, 2793 |
| TspGWI | ACGGA | 6 cut(s) | 246, 472, 650, 2739, 2781, 2909 |
| TspRI | CASTG | 6 cut(s) | 1485, 1615, 2353, 2516, 2596, 2601 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1316, 2712, 3010, 3334 |
| VpaK11BI | GGWCC | 3 cut(s) | 709, 885, 3247 |
| XapI | RAATTY | 9 cut(s) | 137, 797, 1097, 1313, 1442, 1545, 1877, 1889, 2236 |
| XbaI | TCTAGA | 2 cut(s) | 1553, 2851 |
| XceI | RCATGY | 3 cut(s) | 383, 1250, 1868 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1168 |
| XhoI | CTCGAG | 1 cut(s) | 3293 |
| XmiI | GTMKAC | 1 cut(s) | 1685 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1629, 3139 |
| XspI | CTAG | 5 cut(s) | 351, 986, 1167, 1554, 2852 |
| ZrmI | AGTACT | 1 cut(s) | 108 |