Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00264

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

11086 .. 12926

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTTCAGTTAATTATTGACTTCAATGTTGGAAAGCGCCATAATGCTGATTGGAAGAGATGGCTTGAGAATATTCATGATTGGTGCGTCTCACGGAAAATTTGGTGGGGTCACCGCATTCCTGCATGGTATGCCGTTTTGGATGGTGACAAGCCAGAAGATTTTGGATCATTGGATGACCGATGGGTGGTTGCAAGAAATGAGGAAGAGGCTAAAGCACTGGCTGGTCAAAGATATGAGGGAAAGGAGGTTAACCTAGAACAGGATCCTGATGTGCTTGACACGTGGTTTTCTTCTGGTCTCTTCCCATTGTCCGTGTTGGGGTGGGCGGAAGATACAGAAGATTTAAGAGCTTTCTATCCAACTTCAGTTCTTGAAACTGGGCATGACTTTCTCTTTTTCTGGGTCGCTCGTATGGTAATGCTTGGAAGTACATTGGGTGGTAATGTACCTTTCACAAAGGTGTATTTGCATCCAATGATTCGTGATGCGCAGTCCAAGTCCTTGGGTAATGTCATTGATCCTCTTGATGTGATCAATGGTATTTCACTGGAAGATCTACACAAGAAGCTTTCAGAGGGAAATTTGGACCCAAGGGAAATAGCTATAGCCAAAGAAGGCCAAAAAAAGGATTTTCCTGATGGTATTGCTGAATGTGGTTCTGATGCGCTACATTTTGCTCTGGTCTCATACACTGCTCAGTCTGATAAGATAAATCTGGATATCCAAAGGGTTGTCGGTTATCGGCAGTGGTGTAATAAACTTTGGAACACCATACGATTTGCTATGAGCAAACTTGGGGATGATTATGTTCCGCCGTCAACAGTAATCCCAGATGTGCTTCCATTTAGTTGCCGGTGGATACTCTCGGTAATAAATAAAGCCATCTCCAAAACTATTTTGTCATTGGAATCGTACGAGTTTTCAGATGCAGCCACTGCAGTGTATGCTTGGTGGCAGTACCAATGTGTGATGTGTTCATTGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

330

Amino Acids

37.68

Weight (kDa)

5.08

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	12 - 240	1.3e-53	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
AciI	CCGC	3 cut(s)	115, 329, 815
AclWI	GGATC	4 cut(s)	175, 260, 273, 515
AcsI	RAATTY	2 cut(s)	99, 583
AcuI	CTGAAG	1 cut(s)	351
AcvI	CACGTG	1 cut(s)	285
AfaI	GTAC	4 cut(s)	433, 450, 917, 962
AfiI	CCNNNNNNNGG	4 cut(s)	187, 262, 321, 628
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	25, 377, 985
AleI	CACNNNNGTG	2 cut(s)	461, 941
AluBI	AGCT	3 cut(s)	353, 571, 605
AluI	AGCT	3 cut(s)	353, 571, 605
Alw26I	GTCTC	3 cut(s)	94, 305, 691
AlwI	GGATC	4 cut(s)	175, 260, 273, 515
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	932
ApoI	RAATTY	2 cut(s)	99, 583
AspLEI	GCGC	3 cut(s)	39, 493, 670
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	104, 158
AvaII	GGWCC	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	5 cut(s)	54, 137, 177, 635, 893
BceAI	ACGGC	2 cut(s)	119, 802
BciVI	GTATCC	1 cut(s)	855
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	94, 305, 691
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	606, 939
BfoI	RGCGCY	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	855
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	934
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	267, 591
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	478, 481, 655, 919
BmuI	ACTGGG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	285
BsaI	GGTCTC	2 cut(s)	305, 691
BsaJI	CCNNGG	2 cut(s)	504, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 262, 321, 628
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	3 cut(s)	225, 385, 555
BseDI	CCNNGG	2 cut(s)	504, 593
BseGI	GGATG	4 cut(s)	148, 181, 472, 808
BseLI	CCNNNNNNNGG	4 cut(s)	187, 262, 321, 628
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	3 cut(s)	225, 385, 555
BseXI	GCAGC	1 cut(s)	944
BshFI	GGCC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	856
BsiWI	CGTACG	1 cut(s)	915
BslI	CCNNNNNNNGG	4 cut(s)	187, 262, 321, 628
BsmAI	GTCTC	3 cut(s)	94, 305, 691
BsmBI	CGTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	621
Bso31I	GGTCTC	2 cut(s)	305, 691
Bsp143I	GATC	5 cut(s)	167, 265, 520, 534, 556
BspACI	CCGC	3 cut(s)	115, 329, 815
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	267, 591
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	4 cut(s)	175, 260, 273, 515
BspTNI	GGTCTC	2 cut(s)	305, 691
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	3 cut(s)	225, 385, 555
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	2 cut(s)	504, 593
BssMI	GATC	5 cut(s)	167, 265, 520, 534, 556
BssT1I	CCWWGG	2 cut(s)	504, 593
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	3 cut(s)	50, 201, 308
BstAPI	GCANNNNNTGC	3 cut(s)	131, 938, 947
BstBAI	YACGTR	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	699
BstEII	GGTNACC	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	4 cut(s)	148, 181, 472, 808
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	3 cut(s)	39, 493, 670
BstKTI	GATC	5 cut(s)	170, 268, 523, 537, 559
BstMAI	GTCTC	3 cut(s)	94, 305, 691
BstMBI	GATC	5 cut(s)	167, 265, 520, 534, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 938, 947
BstPI	GGTNACC	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	606, 939
BstV1I	GCAGC	1 cut(s)	944
BstX2I	RGATCY	2 cut(s)	265, 556
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	2 cut(s)	265, 556
BsuI	GTATCC	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	621
BtsCI	GGATG	4 cut(s)	148, 181, 472, 808
BtsI	GCAGTG	4 cut(s)	693, 755, 936, 948
BtsIMutI	CAGTG	6 cut(s)	218, 548, 693, 755, 936, 948
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	3 cut(s)	39, 493, 670
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	589
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	432, 449, 916, 961
CviAII	CATG	3 cut(s)	77, 126, 386
CviQI	GTAC	4 cut(s)	432, 449, 916, 961
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	5 cut(s)	169, 267, 522, 536, 558
DpnII	GATC	5 cut(s)	167, 265, 520, 534, 556
Eam1104I	CTCTTC	3 cut(s)	50, 201, 308
EarI	CTCTTC	3 cut(s)	50, 201, 308
EciI	GGCGGA	2 cut(s)	344, 804
Eco130I	CCWWGG	2 cut(s)	504, 593
Eco31I	GGTCTC	2 cut(s)	305, 691
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	351
Eco72I	CACGTG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	504, 593
ErhI	CCWWGG	2 cut(s)	504, 593
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	80, 129, 389
FatI	CATG	3 cut(s)	76, 125, 385
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	933
FokI	GGATG	4 cut(s)	155, 188, 459, 815
Fsp4HI	GCNGC	1 cut(s)	933
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	3 cut(s)	38, 492, 669
GluI	GCNGC	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	856
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	3 cut(s)	39, 493, 670
Hin1II	CATG	3 cut(s)	80, 129, 389
Hin6I	GCGC	3 cut(s)	37, 491, 668
HinP1I	GCGC	3 cut(s)	37, 491, 668
HincII	GTYRAC	2 cut(s)	253, 822
HindII	GTYRAC	2 cut(s)	253, 822
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	2 cut(s)	481, 911
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	2 cut(s)	104, 158
Hpy166II	GTNNAC	2 cut(s)	253, 822
Hpy188I	TCNGA	4 cut(s)	577, 664, 706, 928
Hpy188III	TCNNGA	7 cut(s)	77, 269, 374, 485, 527, 638, 719
Hpy8I	GTNNAC	2 cut(s)	253, 822
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	5 cut(s)	125, 194, 472, 932, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 938, 947
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	80, 129, 389
HspAI	GCGC	3 cut(s)	37, 491, 668
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	167, 265, 520, 534, 556
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	4 cut(s)	478, 481, 655, 919
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	110, 146
MalI	GATC	5 cut(s)	169, 267, 522, 536, 558
MboI	GATC	5 cut(s)	167, 265, 520, 534, 556
MboII	GAAGA	8 cut(s)	67, 170, 218, 285, 295, 344, 353, 566
MflI	RGATCY	2 cut(s)	265, 556
MluCI	AATT	3 cut(s)	12, 99, 583
MmeI	TCCRAC	2 cut(s)	10, 386
MnlI	CCTC	6 cut(s)	196, 202, 232, 241, 534, 571
MseI	TTAA	3 cut(s)	11, 252, 347
MslI	CAYNNNNRTG	2 cut(s)	461, 941
MspI	CCGG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	131, 938, 947
NdeII	GATC	5 cut(s)	167, 265, 520, 534, 556
NlaIII	CATG	3 cut(s)	80, 129, 389
NlaIV	GGNNCC	2 cut(s)	267, 591
NmuCI	GTSAC	2 cut(s)	110, 146
NsbI	TGCGCA	1 cut(s)	492
OliI	CACNNNNGTG	2 cut(s)	461, 941
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	481, 911
Pfl23II	CGTACG	1 cut(s)	915
PkrI	GCNGC	1 cut(s)	934
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	110
PspLI	CGTACG	1 cut(s)	915
PspN4I	GGNNCC	2 cut(s)	267, 591
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	2 cut(s)	265, 556
RsaI	GTAC	4 cut(s)	433, 450, 917, 962
RsaNI	GTAC	4 cut(s)	432, 449, 916, 961
RseI	CAYNNNNRTG	2 cut(s)	461, 941
SaqAI	TTAA	3 cut(s)	11, 252, 347
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	5 cut(s)	167, 265, 520, 534, 556
Sau96I	GGNCC	1 cut(s)	589
SetI	ASST	8 cut(s)	252, 258, 287, 355, 454, 465, 573, 607
SfaNI	GCATC	4 cut(s)	478, 481, 655, 919
SfcI	CTRYAG	2 cut(s)	606, 939
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	461, 941
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	12, 99, 583
SsiI	CCGC	3 cut(s)	115, 329, 815
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	257
StyI	CCWWGG	2 cut(s)	504, 593
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	1 cut(s)	287
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	12, 99, 583
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	481, 911
Tru1I	TTAA	3 cut(s)	11, 252, 347
Tru9I	TTAA	3 cut(s)	11, 252, 347
TscAI	CASTG	6 cut(s)	225, 555, 700, 755, 943, 948
TseFI	GTSAC	2 cut(s)	110, 146
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	2 cut(s)	110, 146
TspDTI	ATGAA	2 cut(s)	65, 969
TspGWI	ACGGA	2 cut(s)	109, 304
TspRI	CASTG	6 cut(s)	225, 555, 700, 755, 943, 948
VpaK11BI	GGWCC	1 cut(s)	589
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	99, 583
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.